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3EQH
Asym. Unit
Info
Asym.Unit (61 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (110 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE HUMAN MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1 (MEK1) IN A TERNARY COMPLEX WITH U0126, ADP AND MG2P
Authors
:
T. O. Fischmann
Date
:
30 Sep 08 (Deposition) - 24 Feb 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Mek1 Kinase, Atp-Binding, Disease Mutation, Kinase, Nucleotide- Binding, Phosphoprotein, Serine/Threonine-Protein Kinase, Transferase, Tyrosine-Protein Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. O. Fischmann, C. K. Smith, T. W. Mayhood, J. E. Myers, P. Reichert, A. Mannarino, D. Carr, H. Zhu, J. Wong, R. S. Yang, H. V. Le, V. S. Madison
Crystal Structures Of Mek1 Binary And Ternary Complexes Wit Nucleotides And Inhibitors.
Biochemistry V. 48 2661 2009
[
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: (2Z)-BIS{AMINO[(2-AMINOPHENYL)SULF... (5BMa)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
3a: CALCIUM ION (CAa)
4a: MAGNESIUM ION (MGa)
5a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5BM
1
Ligand/Ion
(2Z)-BIS{AMINO[(2-AMINOPHENYL)SULFANYL]METHYLIDENE}BUTANEDINITRILE
2
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
3
CA
1
Ligand/Ion
CALCIUM ION
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
NA
1
Ligand/Ion
SODIUM ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:97 , ILE A:99 , LEU A:118 , VAL A:127 , ILE A:141 , MET A:143 , ASP A:190 , ASP A:208 , PHE A:209 , GLY A:210 , VAL A:211 , SER A:212 , ILE A:216
BINDING SITE FOR RESIDUE 5BM A 1
2
AC2
SOFTWARE
MG A:3 , ALA A:76 , GLY A:77 , GLY A:80 , VAL A:82 , ALA A:95 , LYS A:97 , GLU A:144 , MET A:146 , SER A:150 , GLN A:153 , LYS A:192 , SER A:194 , ASN A:195 , LEU A:197 , ASP A:208 , HOH A:504 , HOH A:511 , HOH A:523 , HOH A:531 , HOH A:532
BINDING SITE FOR RESIDUE ADP A 2
3
AC3
SOFTWARE
ADP A:2 , ASN A:195 , ASP A:208 , HOH A:531 , HOH A:532
BINDING SITE FOR RESIDUE MG A 3
4
AC4
SOFTWARE
ASP A:65 , ASP A:66 , HOH A:526
BINDING SITE FOR RESIDUE CA A 5
5
AC5
SOFTWARE
ASP A:65 , ASP A:66 , HOH A:479 , HOH A:527
BINDING SITE FOR RESIDUE NA A 6
[
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035093 (F53S, chain A, )
2: VAR_069780 (G128V, chain A, )
3: VAR_035094 (Y130C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035093
F
53
S
MP2K1_HUMAN
Disease (CFC3)
---
A
F
53
S
2
UniProt
VAR_069780
G
128
V
MP2K1_HUMAN
Disease (CFC3)
---
A
G
128
V
3
UniProt
VAR_035094
Y
130
C
MP2K1_HUMAN
Disease (CFC3)
---
A
Y
130
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:74-97)
2: PROTEIN_KINASE_ST (A:186-198)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
MP2K1_HUMAN
74-97
1
A:74-97
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
MP2K1_HUMAN
186-198
1
A:186-198
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Exons
(10, 10)
Info
All Exons
Exon 1.2a (A:39-97)
Exon 1.3 (A:98-146)
Exon 1.4 (A:147-172)
Exon 1.5 (A:173-190)
Exon 1.6 (A:190-231)
Exon 1.7b (A:232-277)
Exon 1.8 (A:307-320)
Exon 1.9 (A:321-341)
Exon 1.10 (A:341-356)
Exon 1.11 (A:357-381)
View:
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All Exon Boundaries
01: Boundary 1.1/1.2a
02: Boundary 1.2a/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7b
07: Boundary 1.7b/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000307102
1
ENSE00001257104
chr15:
66679155-66679765
611
MP2K1_HUMAN
1-27
27
0
-
-
1.2a
ENST00000307102
2a
ENSE00001199409
chr15:
66727365-66727575
211
MP2K1_HUMAN
27-97
71
1
A:39-97
59
1.3
ENST00000307102
3
ENSE00001675310
chr15:
66729084-66729230
147
MP2K1_HUMAN
98-146
49
1
A:98-146
49
1.4
ENST00000307102
4
ENSE00001134060
chr15:
66735618-66735695
78
MP2K1_HUMAN
147-172
26
1
A:147-172
26
1.5
ENST00000307102
5
ENSE00001134055
chr15:
66736994-66737045
52
MP2K1_HUMAN
173-190
18
1
A:173-190
18
1.6
ENST00000307102
6
ENSE00001199390
chr15:
66774093-66774217
125
MP2K1_HUMAN
190-231
42
1
A:190-231
42
1.7b
ENST00000307102
7b
ENSE00001257056
chr15:
66777328-66777529
202
MP2K1_HUMAN
232-299
68
1
A:232-277
46
1.8
ENST00000307102
8
ENSE00001199379
chr15:
66779566-66779630
65
MP2K1_HUMAN
299-320
22
1
A:307-320
14
1.9
ENST00000307102
9
ENSE00001199374
chr15:
66781553-66781614
62
MP2K1_HUMAN
321-341
21
1
A:321-341
21
1.10
ENST00000307102
10
ENSE00001199370
chr15:
66782056-66782101
46
MP2K1_HUMAN
341-356
16
1
A:341-356
16
1.11
ENST00000307102
11
ENSE00001199414
chr15:
66782840-66783882
1043
MP2K1_HUMAN
357-393
37
1
A:357-381
25
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3eqha_ (A:)
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Classes
(
)
(
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Folds
(
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(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Dual specificity mitogen-activated protein kinase kinase 1, Mek1
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d3eqha_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
Nucleic
Backbone
Sidechain
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (61 KB)
Header - Asym.Unit
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