PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3EOO
Asym. Unit
Info
Asym.Unit (694 KB)
Biol.Unit 1 (177 KB)
Biol.Unit 2 (177 KB)
Biol.Unit 3 (178 KB)
Biol.Unit 4 (177 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
2.9A CRYSTAL STRUCTURE OF METHYL-ISOCITRATE LYASE FROM BURKHOLDERIA PSEUDOMALLEI
Authors
:
Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Date
:
28 Sep 08 (Deposition) - 21 Oct 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,M,N (1x)
Biol. Unit 3: G,H,I,J (1x)
Biol. Unit 4: K,L,O,P (1x)
Keywords
:
Burkholderia, Pseudomallei, Methyl-Isocitrate, Lyase, Seattle Structural Genomics Center For Infectious Disease, Ssgcid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Ssgcid
Crystal Structures Of Isocitrate Lyase From Brucella Melitensis
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d3eooa_ (A:)
1b: SCOP_d3eoob_ (B:)
1c: SCOP_d3eook_ (K:)
1d: SCOP_d3eool_ (L:)
1e: SCOP_d3eoom_ (M:)
1f: SCOP_d3eoon_ (N:)
1g: SCOP_d3eooo_ (O:)
1h: SCOP_d3eoop_ (P:)
1i: SCOP_d3eooc_ (C:)
1j: SCOP_d3eood_ (D:)
1k: SCOP_d3eooe_ (E:)
1l: SCOP_d3eoof_ (F:)
1m: SCOP_d3eoog_ (G:)
1n: SCOP_d3eooh_ (H:)
1o: SCOP_d3eooi_ (I:)
1p: SCOP_d3eooj_ (J:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Phosphoenolpyruvate/pyruvate domain
(92)
Family
:
Phosphoenolpyruvate mutase/Isocitrate lyase-like
(20)
Protein domain
:
automated matches
(3)
Burkholderia pseudomallei [TaxId: 331109]
(1)
1a
d3eooa_
A:
1b
d3eoob_
B:
1c
d3eook_
K:
1d
d3eool_
L:
1e
d3eoom_
M:
1f
d3eoon_
N:
1g
d3eooo_
O:
1h
d3eoop_
P:
1i
d3eooc_
C:
1j
d3eood_
D:
1k
d3eooe_
E:
1l
d3eoof_
F:
1m
d3eoog_
G:
1n
d3eooh_
H:
1o
d3eooi_
I:
1p
d3eooj_
J:
[
close SCOP info
]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_3eooB00 (B:7-292)
1b: CATH_3eooF00 (F:7-292)
1c: CATH_3eooE00 (E:6-293)
1d: CATH_3eooH00 (H:6-293)
1e: CATH_3eooJ00 (J:5-292)
1f: CATH_3eooO00 (O:6-293)
1g: CATH_3eooI00 (I:6-294)
1h: CATH_3eooA00 (A:6-295)
1i: CATH_3eooK00 (K:7-292)
1j: CATH_3eooL00 (L:7-292)
1k: CATH_3eooP00 (P:7-292)
1l: CATH_3eooC00 (C:7-293)
1m: CATH_3eooD00 (D:6-292)
1n: CATH_3eooG00 (G:6-292)
1o: CATH_3eooM00 (M:7-293)
1p: CATH_3eooN00 (N:6-292)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Phosphoenolpyruvate-binding domains
(67)
Burkholderia pseudomallei 1655. Organism_taxid: 331109. Strain: 1710b.
(1)
1a
3eooB00
B:7-292
1b
3eooF00
F:7-292
1c
3eooE00
E:6-293
1d
3eooH00
H:6-293
1e
3eooJ00
J:5-292
1f
3eooO00
O:6-293
1g
3eooI00
I:6-294
1h
3eooA00
A:6-295
1i
3eooK00
K:7-292
1j
3eooL00
L:7-292
1k
3eooP00
P:7-292
1l
3eooC00
C:7-293
1m
3eooD00
D:6-292
1n
3eooG00
G:6-292
1o
3eooM00
M:7-293
1p
3eooN00
N:6-292
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (694 KB)
Header - Asym.Unit
Biol.Unit 1 (177 KB)
Header - Biol.Unit 1
Biol.Unit 2 (177 KB)
Header - Biol.Unit 2
Biol.Unit 3 (178 KB)
Header - Biol.Unit 3
Biol.Unit 4 (177 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3EOO
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help