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3EOJ
Biol. Unit 1
Info
Asym.Unit (181 KB)
Biol.Unit 1 (500 KB)
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(1)
Title
:
FMO PROTEIN FROM PROSTHECOCHLORIS AESTUARII 2K AT 1.3A RESOLUTION
Authors
:
D. E. Tronrud, J. Wen, L. Gay, R. E. Blankenship
Date
:
27 Sep 08 (Deposition) - 12 May 09 (Release) - 18 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Excitation Energy Transfer, Beta Sheet, Gamma-Turns, Bacteriochlorophyll, Chlorophyll, Chromophore, Electron Transport, Magnesium, Metal-Binding, Photosynthesis, Reaction Center, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. E. Tronrud, J. Wen, L. Gay, R. E. Blankenship
The Structural Basis For The Difference In Absorbance Spectra For The Fmo Antenna Protein From Various Green Sulfur Bacteria.
Photosynth. Res. V. 100 79 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 72)
Info
All Hetero Components
1a: BACTERIOCHLOROPHYLL A (BCLa)
1b: BACTERIOCHLOROPHYLL A (BCLb)
1c: BACTERIOCHLOROPHYLL A (BCLc)
1d: BACTERIOCHLOROPHYLL A (BCLd)
1e: BACTERIOCHLOROPHYLL A (BCLe)
1f: BACTERIOCHLOROPHYLL A (BCLf)
1g: BACTERIOCHLOROPHYLL A (BCLg)
1h: BACTERIOCHLOROPHYLL A (BCLh)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
3a: SODIUM ION (NAa)
4a: AMMONIUM ION (NH4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
24
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
EDO
45
Ligand/Ion
1,2-ETHANEDIOL
3
NA
-1
Ligand/Ion
SODIUM ION
4
NH4
3
Ligand/Ion
AMMONIUM ION
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:103 , PHE A:108 , HIS A:110 , PHE A:112 , SER A:126 , ALA A:128 , VAL A:129 , MET A:149 , VAL A:151 , ASP A:157 , LEU A:158 , THR A:161 , TRP A:162 , PHE A:165 , ILE A:180 , TRP A:184 , VAL A:205 , BCL A:372 , BCL A:376 , BCL A:378 , HOH A:1009
BINDING SITE FOR RESIDUE BCL A 371
02
AC2
SOFTWARE
ILE A:70 , SER A:72 , VAL A:74 , ASN A:79 , VAL A:105 , PHE A:112 , TYR A:124 , VAL A:129 , ILE A:133 , PRO A:136 , ILE A:137 , TYR A:138 , GLN A:140 , PHE A:183 , TRP A:184 , ILE A:186 , BCL A:371 , BCL A:376 , BCL A:377 , HOH A:1047 , HOH A:1118
BINDING SITE FOR RESIDUE BCL A 372
03
AC3
SOFTWARE
ALA A:11 , TYR A:15 , ALA A:33 , PRO A:38 , ALA A:39 , ALA A:40 , ILE A:41 , PHE A:185 , ALA A:189 , PHE A:258 , SER A:260 , ILE A:265 , VAL A:267 , HIS A:298 , VAL A:301 , GLY A:302 , ASN A:305 , BCL A:374 , BCL A:375 , BCL A:376 , BCL A:377
BINDING SITE FOR RESIDUE BCL A 373
04
AC4
SOFTWARE
TYR A:15 , ILE A:17 , VAL A:29 , LEU A:288 , HIS A:290 , PRO A:291 , PRO A:294 , HIS A:298 , LEU A:313 , TYR A:345 , TRP A:348 , PHE A:360 , BCL A:373 , BCL A:375 , BCL A:377 , HOH A:1031
BINDING SITE FOR RESIDUE BCL A 374
05
AC5
SOFTWARE
ALA A:54 , VAL A:64 , PHE A:66 , ILE A:70 , ARG A:238 , LEU A:242 , PHE A:243 , PRO A:244 , ILE A:254 , GLY A:256 , PRO A:274 , PRO A:291 , BCL A:373 , BCL A:374 , BCL A:376 , BCL A:377 , HOH A:1030
BINDING SITE FOR RESIDUE BCL A 375
06
AC6
SOFTWARE
ILE A:52 , ALA A:54 , VAL A:85 , ILE A:87 , ARG A:95 , ILE A:96 , ALA A:97 , VAL A:118 , GLN A:143 , HIS A:145 , TRP A:184 , HIS A:227 , TRP A:239 , SER A:253 , BCL A:371 , BCL A:372 , BCL A:373 , BCL A:375 , BCL A:377
BINDING SITE FOR RESIDUE BCL A 376
07
AC7
SOFTWARE
ALA A:40 , ILE A:41 , ILE A:70 , LEU A:81 , TYR A:138 , PHE A:185 , ILE A:186 , PRO A:188 , ALA A:189 , ALA A:192 , GLN A:198 , HIS A:297 , HIS A:298 , VAL A:301 , BCL A:372 , BCL A:373 , BCL A:374 , BCL A:375 , BCL A:376 , HOH A:1012 , HOH A:1211
BINDING SITE FOR RESIDUE BCL A 377
08
AC8
SOFTWARE
MET A:121 , TYR A:123 , TYR A:124 , ARG A:125 , ASP A:160 , THR A:161 , GLY A:164 , PHE A:165 , GLN A:167 , SER A:168 , PHE A:176 , TRP A:179 , ILE A:180 , PHE A:183 , BCL A:371 , HOH A:1304 , HOH A:1305 , HOH A:1306 , HOH A:1307 , HOH A:1309 , HOH A:1310 , HOH A:1311 , HOH A:1312 , HOH A:1316 , HOH A:2105 , HOH A:2106 , HOH A:2231 , HOH A:2334 , HOH A:2400
BINDING SITE FOR RESIDUE BCL A 378
09
AC9
SOFTWARE
ARG A:199 , EDO A:381 , HOH A:1095 , HOH A:1127 , HOH A:1200
BINDING SITE FOR RESIDUE EDO A 379
10
BC1
SOFTWARE
GLU A:255 , GLY A:257 , LYS A:268 , ASP A:270 , HOH A:2241
BINDING SITE FOR RESIDUE EDO A 380
11
BC2
SOFTWARE
ARG A:199 , ILE A:200 , EDO A:379 , HOH A:1010 , HOH A:1018 , HOH A:1127
BINDING SITE FOR RESIDUE EDO A 381
12
BC3
SOFTWARE
ARG A:51 , SER A:253
BINDING SITE FOR RESIDUE EDO A 382
13
BC4
SOFTWARE
GLU A:100 , GLY A:101 , PHE A:112 , HOH A:2264 , HOH A:2362
BINDING SITE FOR RESIDUE EDO A 383
14
BC5
SOFTWARE
SER A:13 , ASP A:14 , ASP A:310
BINDING SITE FOR RESIDUE EDO A 384
15
BC6
SOFTWARE
ARG A:65 , GLU A:84 , ASP A:86 , VAL A:98 , GLU A:100
BINDING SITE FOR RESIDUE EDO A 385
16
BC7
SOFTWARE
HIS A:12 , ASP A:14 , LYS A:34
BINDING SITE FOR RESIDUE EDO A 386
17
BC8
SOFTWARE
GLY A:173 , ALA A:174 , GLY A:177 , ILE A:203 , VAL A:204 , VAL A:205 , HOH A:1267
BINDING SITE FOR RESIDUE EDO A 390
18
BC9
SOFTWARE
SER A:25 , GLN A:247 , ARG A:278 , ASP A:279 , ARG A:285 , HOH A:2360 , HOH A:2361
BINDING SITE FOR RESIDUE EDO A 387
19
CC1
SOFTWARE
ARG A:278 , ASP A:279 , ARG A:286 , HOH A:1121 , HOH A:1136 , HOH A:2224 , HOH A:2233
BINDING SITE FOR RESIDUE EDO A 391
20
CC2
SOFTWARE
ALA A:191 , ASN A:194 , GLU A:195 , NH4 A:2378
BINDING SITE FOR RESIDUE EDO A 388
21
CC3
SOFTWARE
VAL A:63 , ALA A:88 , ASN A:89 , HOH A:1141 , HOH A:1264
BINDING SITE FOR RESIDUE EDO A 392
22
CC4
SOFTWARE
TYR A:138 , PRO A:188 , VAL A:296 , THR A:357 , HOH A:1024 , HOH A:1202
BINDING SITE FOR RESIDUE EDO A 389
23
CC5
SOFTWARE
LEU A:148 , TYR A:321 , LYS A:322 , LEU A:335 , GLU A:336 , HOH A:1174
BINDING SITE FOR RESIDUE EDO A 393
24
CC6
SOFTWARE
SER A:109 , HOH A:1086 , HOH A:1109 , HOH A:1117 , HOH A:2242
BINDING SITE FOR RESIDUE NA A 1232
25
CC7
SOFTWARE
GLU A:195 , EDO A:388
BINDING SITE FOR RESIDUE NH4 A 2378
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3eoja_ (A:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Bacteriochlorophyll A protein
(4)
Superfamily
:
Bacteriochlorophyll A protein
(4)
Family
:
Bacteriochlorophyll A protein
(4)
Protein domain
:
Bacteriochlorophyll A protein
(2)
Prosthecochloris aestuarii, strain 2k [TaxId: 1102]
(1)
1a
d3eoja_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3eojA00 (A:7-366)
View:
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(
)
(
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Architectures
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Topologies
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Clam
(12)
Topology
:
Bacteriochlorophyll-a Protein
(4)
Homologous Superfamily
:
Bacteriochlorophyll-a Protein
(4)
Prosthecochloris aestuarii 2k. Organism_taxid: 1102.
(1)
1a
3eojA00
A:7-366
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT PROSITE
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