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3EOB
Asym. Unit
Info
Asym.Unit (185 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (93 KB)
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(1)
Title
:
CRYSTAL STRUCTURE THE FAB FRAGMENT OF EFALIZUMAB IN COMPLEX WITH LFA-1 I DOMAIN, FORM II
Authors
:
S. Li, J. Ding
Date
:
26 Sep 08 (Deposition) - 14 Apr 09 (Release) - 14 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : A,B,H,I,J,L
Biol. Unit 1: H,I,L (1x)
Biol. Unit 2: A,B,J (1x)
Keywords
:
Efalizumab, Fab, Antibody, Lfa-1, Cd11A, I Domain, Alternative Splicing, Calcium, Cell Adhesion, Glycoprotein, Integrin, Magnesium, Membrane, Polymorphism, Receptor, Transmembrane, Immune System/Cell Adhesion Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Li, H. Wang, B. Peng, M. Zhang, D. Zhang, S. Hou, Y. Guo, J. Ding
Efalizumab Binding To The Lfa-1 Alphal I Domain Blocks Icam-1 Binding Via Steric Hindrance.
Proc. Natl. Acad. Sci. Usa V. 106 4349 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER I:139 , SER I:141 , ASP I:239
BINDING SITE FOR RESIDUE ZN I 1
2
AC2
SOFTWARE
ASP J:137 , SER J:139 , SER J:141 , ASP J:239
BINDING SITE FOR RESIDUE ZN J 2
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_025236 (R189W, chain I/J, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_025236
R
214
W
ITAL_HUMAN
Polymorphism
1064524
I/J
R
189
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: VWFA (I:131-302,J:131-302)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VWFA
PS50234
VWFA domain profile.
ITAL_HUMAN
156-327
2
I:131-302
J:131-302
[
close PROSITE info
]
Exons
(4, 8)
Info
All Exons
Exon 1.6 (I:128-167 | J:128-167)
Exon 1.7 (I:168-216 | J:168-216)
Exon 1.8 (I:216-260 | J:216-260)
Exon 1.9 (I:261-306 | J:261-306)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000356798
1a
ENSE00002147085
chr16:
30483983-30484219
237
ITAL_HUMAN
1-21
21
0
-
-
1.2b
ENST00000356798
2b
ENSE00001770886
chr16:
30485517-30485619
103
ITAL_HUMAN
21-55
35
0
-
-
1.3
ENST00000356798
3
ENSE00001621476
chr16:
30486627-30486721
95
ITAL_HUMAN
55-87
33
0
-
-
1.4
ENST00000356798
4
ENSE00001775052
chr16:
30486834-30486901
68
ITAL_HUMAN
87-109
23
0
-
-
1.5
ENST00000356798
5
ENSE00001718084
chr16:
30490412-30490529
118
ITAL_HUMAN
110-149
40
0
-
-
1.6
ENST00000356798
6
ENSE00001643987
chr16:
30490652-30490782
131
ITAL_HUMAN
149-192
44
2
I:128-167
J:128-167
40
40
1.7
ENST00000356798
7
ENSE00001594214
chr16:
30492760-30492905
146
ITAL_HUMAN
193-241
49
2
I:168-216
J:168-216
49
49
1.8
ENST00000356798
8
ENSE00001756914
chr16:
30495148-30495280
133
ITAL_HUMAN
241-285
45
2
I:216-260
J:216-260
45
45
1.9
ENST00000356798
9
ENSE00001781646
chr16:
30495434-30495584
151
ITAL_HUMAN
286-336
51
2
I:261-306
J:261-306
46
46
1.10
ENST00000356798
10
ENSE00001704215
chr16:
30500403-30500476
74
ITAL_HUMAN
336-360
25
0
-
-
1.11
ENST00000356798
11
ENSE00001741327
chr16:
30500575-30500707
133
ITAL_HUMAN
361-405
45
0
-
-
1.12
ENST00000356798
12
ENSE00001592674
chr16:
30505533-30505684
152
ITAL_HUMAN
405-455
51
0
-
-
1.13
ENST00000356798
13
ENSE00001785598
chr16:
30506034-30506171
138
ITAL_HUMAN
456-501
46
0
-
-
1.14
ENST00000356798
14
ENSE00001694693
chr16:
30507418-30507615
198
ITAL_HUMAN
502-567
66
0
-
-
1.15
ENST00000356798
15
ENSE00001704204
chr16:
30507757-30507887
131
ITAL_HUMAN
568-611
44
0
-
-
1.16a
ENST00000356798
16a
ENSE00001611961
chr16:
30510395-30510555
161
ITAL_HUMAN
611-665
55
0
-
-
1.17
ENST00000356798
17
ENSE00001610939
chr16:
30510659-30510810
152
ITAL_HUMAN
665-715
51
0
-
-
1.18
ENST00000356798
18
ENSE00001693046
chr16:
30515496-30515585
90
ITAL_HUMAN
716-745
30
0
-
-
1.19a
ENST00000356798
19a
ENSE00001609957
chr16:
30516565-30516621
57
ITAL_HUMAN
746-764
19
0
-
-
1.20
ENST00000356798
20
ENSE00001755479
chr16:
30516710-30516783
74
ITAL_HUMAN
765-789
25
0
-
-
1.21
ENST00000356798
21
ENSE00001735592
chr16:
30518036-30518177
142
ITAL_HUMAN
789-836
48
0
-
-
1.22
ENST00000356798
22
ENSE00001788360
chr16:
30521682-30521792
111
ITAL_HUMAN
837-873
37
0
-
-
1.23a
ENST00000356798
23a
ENSE00001758712
chr16:
30522202-30522281
80
ITAL_HUMAN
874-900
27
0
-
-
1.24
ENST00000356798
24
ENSE00001615572
chr16:
30522371-30522457
87
ITAL_HUMAN
900-929
30
0
-
-
1.25
ENST00000356798
25
ENSE00001670842
chr16:
30525092-30525167
76
ITAL_HUMAN
929-954
26
0
-
-
1.26
ENST00000356798
26
ENSE00001795073
chr16:
30528294-30528407
114
ITAL_HUMAN
955-992
38
0
-
-
1.27
ENST00000356798
27
ENSE00001688272
chr16:
30528970-30529026
57
ITAL_HUMAN
993-1011
19
0
-
-
1.28
ENST00000356798
28
ENSE00001734661
chr16:
30529118-30529216
99
ITAL_HUMAN
1012-1044
33
0
-
-
1.29
ENST00000356798
29
ENSE00001721322
chr16:
30529945-30530040
96
ITAL_HUMAN
1045-1076
32
0
-
-
1.30
ENST00000356798
30
ENSE00001673761
chr16:
30531178-30531288
111
ITAL_HUMAN
1077-1113
37
0
-
-
1.31b
ENST00000356798
31b
ENSE00001399855
chr16:
30532813-30534505
1693
ITAL_HUMAN
1114-1170
57
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3eobI00 (I:128-306)
1b: CATH_3eobJ00 (J:128-306)
2a: CATH_3eobA02 (A:109-214)
2b: CATH_3eobB02 (B:122-220)
2c: CATH_3eobH02 (H:122-220)
2d: CATH_3eobB01 (B:1-121)
2e: CATH_3eobH01 (H:1-121)
2f: CATH_3eobL02 (L:109-214)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.410, no name defined]
(87)
Homo sapiens. Organism_taxid: 9606.
(3)
1a
3eobI00
I:128-306
1b
3eobJ00
J:128-306
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Homo sapiens. Organism_taxid: 9606.
(8)
2a
3eobA02
A:109-214
2b
3eobB02
B:122-220
2c
3eobH02
H:122-220
2d
3eobB01
B:1-121
2e
3eobH01
H:1-121
2f
3eobL02
L:109-214
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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]
Atom Selection
(currently selected atoms:
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Chain L
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Asym.Unit (185 KB)
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