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3ELN
Asym. Unit
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Asym.Unit (86 KB)
Biol.Unit 1 (81 KB)
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(1)
Title
:
A PUTATIVE FE2+-BOUND PERSULFENATE INTERMEDIATE IN CYSTEINE DIOXYGENASE
Authors
:
C. R. Simmons, M. H. Stipanuk, P. A. Karplus
Date
:
22 Sep 08 (Deposition) - 21 Oct 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.42
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Peroxysulfenate, Non-Heme Dioxygenases, Fe2+ Metalloenzyme, Cysteine, Taurine, Thioether, Dioxygenase, Iron, Metal- Binding, Oxidoreductase, Phosphoprotein, Thioether Bond
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. R. Simmons, K. Krishnamoorthy, S. L. Granett, D. J. Schuller, J. E. Dominy, T. P. Begley, M. H. Stipanuk, P. A. Karplus
A Putative Fe2+-Bound Persulfenate Intermediate In Cysteine Dioxygenase.
Biochemistry V. 47 11390 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: S-HYDROPEROXYCYSTEINE (2COa)
2a: FE (II) ION (FE2a)
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No.
Name
Count
Type
Full Name
1
2CO
1
Ligand/Ion
S-HYDROPEROXYCYSTEINE
2
FE2
1
Ligand/Ion
FE (II) ION
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Sites
(2, 2)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:86 , HIS A:88 , HIS A:140 , 2CO A:580
BINDING SITE FOR RESIDUE FE2 A 501
2
AC2
SOFTWARE
TYR A:58 , ARG A:60 , LEU A:75 , HIS A:86 , HIS A:88 , CYS A:93 , LEU A:95 , HIS A:140 , VAL A:142 , HIS A:155 , TYR A:157 , FE2 A:501
BINDING SITE FOR RESIDUE 2CO A 580
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:4-57)
Exon 1.2 (A:57-83)
Exon 1.3 (A:83-135)
Exon 1.4 (A:135-190)
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1: Boundary -/1.1
2: Boundary 1.1/1.2
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4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000000172
1
ENSRNOE00000000927
chr18:
40928671-40928313
359
CDO1_RAT
1-57
57
1
A:4-57
54
1.2
ENSRNOT00000000172
2
ENSRNOE00000252649
chr18:
40924128-40924051
78
CDO1_RAT
57-83
27
1
A:57-83
27
1.3
ENSRNOT00000000172
3
ENSRNOE00000252644
chr18:
40921496-40921342
155
CDO1_RAT
83-135
53
1
A:83-135
53
1.4
ENSRNOT00000000172
4
ENSRNOE00000035450
chr18:
40916340-40916171
170
CDO1_RAT
135-191
57
1
A:135-190
56
1.5
ENSRNOT00000000172
5
ENSRNOE00000252662
chr18:
40914722-40914028
695
CDO1_RAT
192-200
9
0
-
-
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SCOP Domains
(1, 1)
Info
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1a: SCOP_d3elna_ (A:)
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)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
RmlC-like cupins
(220)
Family
:
Cysteine dioxygenase type I
(25)
Protein domain
:
Cysteine dioxygenase type I
(24)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(20)
1a
d3elna_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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