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3EK1
Asym. Unit
Info
Asym.Unit (648 KB)
Biol.Unit 1 (328 KB)
Biol.Unit 2 (321 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALDEHYDE DEHYDROGENASE FROM BRUCELLA MELITENSIS BIOVAR ABORTUS 2308
Authors
:
Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Date
:
18 Sep 08 (Deposition) - 30 Sep 08 (Release) - 14 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Ssgcid, Aldehyde Dehydrogenase, , Oxidoreductase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Crystal Structure Of Aldehyde Dehydrogenase From Brucella Melitensis Biovar Abortus 2308
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
1b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
1c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
1d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
1e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
1f: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESf)
1g: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESg)
1h: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESh)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MES
8
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2
SO4
8
Ligand/Ion
SULFATE ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:181 , ALA A:183 , ASP A:184 , ALA A:214 , HOH A:657 , HOH A:828 , HOH A:1007
BINDING SITE FOR RESIDUE SO4 A 484
02
AC2
SOFTWARE
TYR A:112 , PHE A:159 , ARG A:166 , ARG A:284 , CYS A:290 , VAL A:291 , SER A:445 , HOH A:580 , HOH A:649
BINDING SITE FOR RESIDUE MES A 485
03
AC3
SOFTWARE
ARG B:181 , ALA B:183 , ASP B:184 , ALA B:214 , HOH B:657 , HOH B:734 , HOH B:855 , HOH B:860
BINDING SITE FOR RESIDUE SO4 B 484
04
AC4
SOFTWARE
TYR B:112 , PHE B:159 , MET B:163 , ARG B:166 , GLU B:256 , ARG B:284 , CYS B:290 , VAL B:291 , SER B:445 , HOH B:774 , HOH B:850
BINDING SITE FOR RESIDUE MES B 485
05
AC5
SOFTWARE
ARG C:181 , ASP C:184 , ALA C:214 , HOH C:610 , HOH C:649 , HOH C:781
BINDING SITE FOR RESIDUE SO4 C 484
06
AC6
SOFTWARE
TYR C:112 , PHE C:159 , ARG C:166 , GLU C:256 , VAL C:291 , SER C:445 , HOH C:725 , HOH C:836
BINDING SITE FOR RESIDUE MES C 485
07
AC7
SOFTWARE
ARG D:181 , ALA D:183 , ASP D:184 , HOH D:548 , HOH D:658 , HOH D:820
BINDING SITE FOR RESIDUE SO4 D 484
08
AC8
SOFTWARE
TYR D:112 , PHE D:159 , ARG D:166 , THR D:289 , CYS D:290 , VAL D:291 , SER D:445 , HOH D:493
BINDING SITE FOR RESIDUE MES D 485
09
AC9
SOFTWARE
ARG E:181 , ASP E:184 , ALA E:214 , HOH E:614
BINDING SITE FOR RESIDUE SO4 E 484
10
BC1
SOFTWARE
TYR E:112 , PHE E:159 , ARG E:166 , CYS E:290 , VAL E:291 , SER E:445 , HOH E:612
BINDING SITE FOR RESIDUE MES E 485
11
BC2
SOFTWARE
ARG F:181 , ALA F:183 , ASP F:184 , ALA F:214 , HOH F:673 , HOH F:753 , HOH F:840
BINDING SITE FOR RESIDUE SO4 F 484
12
BC3
SOFTWARE
TYR F:112 , PHE F:159 , MET F:163 , ARG F:166 , ARG F:284 , CYS F:290 , VAL F:291 , SER F:445
BINDING SITE FOR RESIDUE MES F 485
13
BC4
SOFTWARE
ARG G:181 , ALA G:183 , ASP G:184 , ALA G:214 , HOH G:721
BINDING SITE FOR RESIDUE SO4 G 484
14
BC5
SOFTWARE
TYR G:112 , PHE G:159 , ARG G:166 , GLU G:256 , ARG G:284 , CYS G:290 , VAL G:291 , SER G:445 , HOH G:687
BINDING SITE FOR RESIDUE MES G 485
15
BC6
SOFTWARE
ARG H:181 , ALA H:183 , ASP H:184 , HOH H:622
BINDING SITE FOR RESIDUE SO4 H 484
16
BC7
SOFTWARE
TYR H:112 , PHE H:159 , MET H:163 , ARG H:166 , GLU H:256 , ARG H:284 , CYS H:290 , VAL H:291 , SER H:445 , HOH H:489
BINDING SITE FOR RESIDUE MES H 485
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3ek1a_ (A:)
1b: SCOP_d3ek1b_ (B:)
1c: SCOP_d3ek1c_ (C:)
1d: SCOP_d3ek1d_ (D:)
1e: SCOP_d3ek1e_ (E:)
1f: SCOP_d3ek1f_ (F:)
1g: SCOP_d3ek1g_ (G:)
1h: SCOP_d3ek1h_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Brucella melitensis [TaxId: 359391]
(1)
1a
d3ek1a_
A:
1b
d3ek1b_
B:
1c
d3ek1c_
C:
1d
d3ek1d_
D:
1e
d3ek1e_
E:
1f
d3ek1f_
F:
1g
d3ek1g_
G:
1h
d3ek1h_
H:
[
close SCOP info
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_3ek1G01 (G:2-258,G:447-483)
1b: CATH_3ek1B01 (B:1-258,B:447-483)
1c: CATH_3ek1C01 (C:1-258,C:447-483)
1d: CATH_3ek1D01 (D:1-258,D:447-483)
1e: CATH_3ek1E01 (E:1-258,E:447-483)
1f: CATH_3ek1F01 (F:1-258,F:447-483)
1g: CATH_3ek1H01 (H:1-258,H:447-483)
1h: CATH_3ek1A01 (A:-1-258,A:447-483)
2a: CATH_3ek1A02 (A:259-446)
2b: CATH_3ek1B02 (B:259-446)
2c: CATH_3ek1C02 (C:259-446)
2d: CATH_3ek1D02 (D:259-446)
2e: CATH_3ek1E02 (E:259-446)
2f: CATH_3ek1F02 (F:259-446)
2g: CATH_3ek1G02 (G:259-446)
2h: CATH_3ek1H02 (H:259-446)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Brucella melitensis biovar abortus 2308. Organism_taxid: 359391. Strain: biovar abortus 2308.
(1)
1a
3ek1G01
G:2-258,G:447-483
1b
3ek1B01
B:1-258,B:447-483
1c
3ek1C01
C:1-258,C:447-483
1d
3ek1D01
D:1-258,D:447-483
1e
3ek1E01
E:1-258,E:447-483
1f
3ek1F01
F:1-258,F:447-483
1g
3ek1H01
H:1-258,H:447-483
1h
3ek1A01
A:-1-258,A:447-483
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Brucella melitensis biovar abortus 2308. Organism_taxid: 359391. Strain: biovar abortus 2308.
(1)
2a
3ek1A02
A:259-446
2b
3ek1B02
B:259-446
2c
3ek1C02
C:259-446
2d
3ek1D02
D:259-446
2e
3ek1E02
E:259-446
2f
3ek1F02
F:259-446
2g
3ek1G02
G:259-446
2h
3ek1H02
H:259-446
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Pfam Domains
(0, 0)
Info
all PFAM domains
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