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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3EJH
Asym. Unit
Info
Asym.Unit (89 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (43 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FIBRONECTIN 8-9FNI DOMAIN PAIR IN COMPLEX WITH A TYPE-I COLLAGEN PEPTIDE
Authors
:
M. C. Erat, E. D. Lowe, I. D. Campbell, I. Vakonakis
Date
:
18 Sep 08 (Deposition) - 03 Feb 09 (Release) - 14 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Keywords
:
Fibronectin, Collagen, Protein Complex, Collagenase Site, Acute Phase, Cell Adhesion, Disease Mutation, Extracellular Matrix, Glycoprotein, Heparin-Binding, Phosphoprotein, Pyrrolidone Carboxylic Acid, Secreted, Sulfation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Erat, D. A. Slatter, E. D. Lowe, C. J. Millard, R. W. Farndale, I. D. Campbell, I. Vakonakis
Identification And Structural Analysis Of Type I Collagen Sites In Complex With Fibronectin Fragments.
Proc. Natl. Acad. Sci. Usa V. 106 4195 2009
[
close entry info
]
Hetero Components
(3, 8)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: 4-HYDROXYPROLINE (HYPa)
2b: 4-HYDROXYPROLINE (HYPb)
2c: 4-HYDROXYPROLINE (HYPc)
2d: 4-HYDROXYPROLINE (HYPd)
2e: 4-HYDROXYPROLINE (HYPe)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
HYP
5
Mod. Amino Acid
4-HYDROXYPROLINE
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:542 , CYS A:543 , THR A:544 , LYS A:554 , ASP A:556 , HOH A:610 , ARG F:967
BINDING SITE FOR RESIDUE NAG A 1
2
AC2
SOFTWARE
HOH B:11 , HOH B:33 , HOH B:102 , ASN B:542 , CYS B:543 , THR B:544 , LYS B:554 , ASP B:556 , ARG E:967
BINDING SITE FOR RESIDUE NAG B 1
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_063331 (G977D, chain F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063331
G
977
D
CO1A1_HUMAN
Disease (OI2)
---
F
G
977
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: FN1_2 (-|-|-|-|-|-|-|A:516-558,B:516-558|...)
2: FN1_1 (-|-|-|-|-|-|-|A:518-555,B:518-555|...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN1_2
PS51091
Fibronectin type-I domain profile.
FINC_HUMAN
50-90
95-138
139-182
184-228
229-273
306-345
468-511
516-558
559-602
2204-2248
2249-2291
2293-2333
4
-
-
-
-
-
-
-
A:516-558
B:516-558
A:559-602
B:559-602
-
-
-
2
FN1_1
PS01253
Fibronectin type-I domain signature.
FINC_HUMAN
52-87
97-135
141-179
186-225
231-270
308-342
470-508
518-555
561-599
2206-2245
2251-2288
2295-2330
4
-
-
-
-
-
-
-
A:518-555
B:518-555
A:561-599
B:561-599
-
-
-
[
close PROSITE info
]
Exons
(4, 8)
Info
All Exons
Exon 1.36 (E:960-974 | F:956-978 (gaps))
Exon 2.10 (A:516-516 | B:516-516)
Exon 2.11b (A:516-559 | B:516-559)
Exon 2.12b (A:559-606 | B:559-602)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.35/1.36
2: Boundary 1.36/1.37
3: Boundary 2.9/2.10
4: Boundary 2.10/2.11b
5: Boundary 2.11b/2.12b
6: Boundary 2.12b/2.13a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000225964
1
ENSE00002177604
chr17:
48278993-48278772
222
CO1A1_HUMAN
1-35
35
0
-
-
1.2b
ENST00000225964
2b
ENSE00000736698
chr17:
48277308-48277114
195
CO1A1_HUMAN
35-100
66
0
-
-
1.3a
ENST00000225964
3a
ENSE00000736703
chr17:
48276951-48276917
35
CO1A1_HUMAN
100-111
12
0
-
-
1.3c
ENST00000225964
3c
ENSE00000819876
chr17:
48276814-48276779
36
CO1A1_HUMAN
112-123
12
0
-
-
1.4c
ENST00000225964
4c
ENSE00000819877
chr17:
48276688-48276587
102
CO1A1_HUMAN
124-157
34
0
-
-
1.5b
ENST00000225964
5b
ENSE00000736713
chr17:
48275865-48275794
72
CO1A1_HUMAN
158-181
24
0
-
-
1.6
ENST00000225964
6
ENSE00001409307
chr17:
48275566-48275522
45
CO1A1_HUMAN
182-196
15
0
-
-
1.7
ENST00000225964
7
ENSE00001415928
chr17:
48275363-48275310
54
CO1A1_HUMAN
197-214
18
0
-
-
1.8
ENST00000225964
8
ENSE00001625237
chr17:
48275146-48275093
54
CO1A1_HUMAN
215-232
18
0
-
-
1.9
ENST00000225964
9
ENSE00001425380
chr17:
48274594-48274541
54
CO1A1_HUMAN
233-250
18
0
-
-
1.10
ENST00000225964
10
ENSE00001423806
chr17:
48274424-48274371
54
CO1A1_HUMAN
251-268
18
0
-
-
1.11
ENST00000225964
11
ENSE00000736739
chr17:
48274031-48273978
54
CO1A1_HUMAN
269-286
18
0
-
-
1.12c
ENST00000225964
12c
ENSE00000736743
chr17:
48273889-48273845
45
CO1A1_HUMAN
287-301
15
0
-
-
1.12d
ENST00000225964
12d
ENSE00000736747
chr17:
48273728-48273675
54
CO1A1_HUMAN
302-319
18
0
-
-
1.13a
ENST00000225964
13a
ENSE00000736751
chr17:
48273560-48273516
45
CO1A1_HUMAN
320-334
15
0
-
-
1.14
ENST00000225964
14
ENSE00001765229
chr17:
48273337-48273284
54
CO1A1_HUMAN
335-352
18
0
-
-
1.15
ENST00000225964
15
ENSE00001241881
chr17:
48273026-48272928
99
CO1A1_HUMAN
353-385
33
0
-
-
1.16
ENST00000225964
16
ENSE00000736762
chr17:
48272839-48272795
45
CO1A1_HUMAN
386-400
15
0
-
-
1.17
ENST00000225964
17
ENSE00000736765
chr17:
48272691-48272593
99
CO1A1_HUMAN
401-433
33
0
-
-
1.18
ENST00000225964
18
ENSE00000736768
chr17:
48272461-48272408
54
CO1A1_HUMAN
434-451
18
0
-
-
1.19
ENST00000225964
19
ENSE00000736772
chr17:
48272189-48272082
108
CO1A1_HUMAN
452-487
36
0
-
-
1.20
ENST00000225964
20
ENSE00000736776
chr17:
48271987-48271934
54
CO1A1_HUMAN
488-505
18
0
-
-
1.21a
ENST00000225964
21a
ENSE00000736779
chr17:
48271808-48271710
99
CO1A1_HUMAN
506-538
33
0
-
-
1.22a
ENST00000225964
22a
ENSE00000736782
chr17:
48271544-48271491
54
CO1A1_HUMAN
539-556
18
0
-
-
1.22d
ENST00000225964
22d
ENSE00000736786
chr17:
48271402-48271304
99
CO1A1_HUMAN
557-589
33
0
-
-
1.23
ENST00000225964
23
ENSE00000736790
chr17:
48270408-48270355
54
CO1A1_HUMAN
590-607
18
0
-
-
1.24
ENST00000225964
24
ENSE00001739834
chr17:
48270211-48270158
54
CO1A1_HUMAN
608-625
18
0
-
-
1.25
ENST00000225964
25
ENSE00000736796
chr17:
48270054-48270001
54
CO1A1_HUMAN
626-643
18
0
-
-
1.26
ENST00000225964
26
ENSE00000736799
chr17:
48269889-48269836
54
CO1A1_HUMAN
644-661
18
0
-
-
1.27b
ENST00000225964
27b
ENSE00000736802
chr17:
48269385-48269341
45
CO1A1_HUMAN
662-676
15
0
-
-
1.28b
ENST00000225964
28b
ENSE00000736805
chr17:
48269247-48269149
99
CO1A1_HUMAN
677-709
33
0
-
-
1.29
ENST00000225964
29
ENSE00000736808
chr17:
48268851-48268744
108
CO1A1_HUMAN
710-745
36
0
-
-
1.30b
ENST00000225964
30b
ENSE00000736811
chr17:
48268285-48268178
108
CO1A1_HUMAN
746-781
36
0
-
-
1.31a
ENST00000225964
31a
ENSE00000736814
chr17:
48267957-48267904
54
CO1A1_HUMAN
782-799
18
0
-
-
1.31c
ENST00000225964
31c
ENSE00000736819
chr17:
48267741-48267688
54
CO1A1_HUMAN
800-817
18
0
-
-
1.32
ENST00000225964
32
ENSE00000736823
chr17:
48267469-48267362
108
CO1A1_HUMAN
818-853
36
0
-
-
1.33
ENST00000225964
33
ENSE00000736827
chr17:
48267273-48267220
54
CO1A1_HUMAN
854-871
18
0
-
-
1.34
ENST00000225964
34
ENSE00000736830
chr17:
48267093-48267040
54
CO1A1_HUMAN
872-889
18
0
-
-
1.35
ENST00000225964
35
ENSE00000736832
chr17:
48266899-48266738
162
CO1A1_HUMAN
890-943
54
0
-
-
1.36
ENST00000225964
36
ENSE00000736834
chr17:
48266636-48266529
108
CO1A1_HUMAN
944-979
36
2
E:960-974
F:956-978 (gaps)
15
23
1.37
ENST00000225964
37
ENSE00000736836
chr17:
48266371-48266264
108
CO1A1_HUMAN
980-1015
36
0
-
-
1.38a
ENST00000225964
38a
ENSE00000736838
chr17:
48266156-48266103
54
CO1A1_HUMAN
1016-1033
18
0
-
-
1.39a
ENST00000225964
39a
ENSE00000736840
chr17:
48265998-48265891
108
CO1A1_HUMAN
1034-1069
36
0
-
-
1.39d
ENST00000225964
39d
ENSE00000736842
chr17:
48265510-48265457
54
CO1A1_HUMAN
1070-1087
18
0
-
-
1.39e
ENST00000225964
39e
ENSE00001644681
chr17:
48265344-48265237
108
CO1A1_HUMAN
1088-1123
36
0
-
-
1.40
ENST00000225964
40
ENSE00000736847
chr17:
48264898-48264845
54
CO1A1_HUMAN
1124-1141
18
0
-
-
1.41
ENST00000225964
41
ENSE00001594859
chr17:
48264483-48264376
108
CO1A1_HUMAN
1142-1177
36
0
-
-
1.42a
ENST00000225964
42a
ENSE00000736851
chr17:
48264283-48264001
283
CO1A1_HUMAN
1178-1272
95
0
-
-
1.43a
ENST00000225964
43a
ENSE00000736853
chr17:
48263868-48263678
191
CO1A1_HUMAN
1272-1335
64
0
-
-
1.43c
ENST00000225964
43c
ENSE00000736855
chr17:
48263381-48263139
243
CO1A1_HUMAN
1336-1416
81
0
-
-
1.44
ENST00000225964
44
ENSE00001132088
chr17:
48263009-48260650
2360
CO1A1_HUMAN
1417-1464
48
0
-
-
2.1c
ENST00000359671
1c
ENSE00001245714
chr2:
216300791-216300378
414
FINC_HUMAN
1-50
50
0
-
-
2.2
ENST00000359671
2
ENSE00001342487
chr2:
216299547-216299419
129
FINC_HUMAN
50-93
44
0
-
-
2.3
ENST00000359671
3
ENSE00001146266
chr2:
216298184-216298047
138
FINC_HUMAN
93-139
47
0
-
-
2.4
ENST00000359671
4
ENSE00001342465
chr2:
216296687-216296556
132
FINC_HUMAN
139-183
45
0
-
-
2.5
ENST00000359671
5
ENSE00001342461
chr2:
216295575-216295438
138
FINC_HUMAN
183-229
47
0
-
-
2.6
ENST00000359671
6
ENSE00001146236
chr2:
216293061-216292903
159
FINC_HUMAN
229-282
54
0
-
-
2.7
ENST00000359671
7
ENSE00001245674
chr2:
216290008-216289817
192
FINC_HUMAN
282-346
65
0
-
-
2.8
ENST00000359671
8
ENSE00001245669
chr2:
216289048-216288869
180
FINC_HUMAN
346-406
61
0
-
-
2.9
ENST00000359671
9
ENSE00001146209
chr2:
216288249-216288073
177
FINC_HUMAN
406-465
60
0
-
-
2.10
ENST00000359671
10
ENSE00001245657
chr2:
216286966-216286814
153
FINC_HUMAN
465-516
52
2
A:516-516
B:516-516
1
1
2.11b
ENST00000359671
11b
ENSE00001342442
chr2:
216285524-216285396
129
FINC_HUMAN
516-559
44
2
A:516-559
B:516-559
44
44
2.12b
ENST00000359671
12b
ENSE00001146180
chr2:
216284108-216283965
144
FINC_HUMAN
559-607
49
2
A:559-606
B:559-602
48
44
2.13a
ENST00000359671
13a
ENSE00001223232
chr2:
216279681-216279560
122
FINC_HUMAN
607-647
41
0
-
-
2.14a
ENST00000359671
14a
ENSE00001342433
chr2:
216274837-216274657
181
FINC_HUMAN
648-708
61
0
-
-
2.14c
ENST00000359671
14c
ENSE00001342429
chr2:
216274462-216274286
177
FINC_HUMAN
708-767
60
0
-
-
2.15b
ENST00000359671
15b
ENSE00001146152
chr2:
216273149-216273021
129
FINC_HUMAN
767-810
44
0
-
-
2.16
ENST00000359671
16
ENSE00001342422
chr2:
216272920-216272831
90
FINC_HUMAN
810-840
31
0
-
-
2.17
ENST00000359671
17
ENSE00001342419
chr2:
216272044-216271850
195
FINC_HUMAN
840-905
66
0
-
-
2.18
ENST00000359671
18
ENSE00001342416
chr2:
216271233-216270961
273
FINC_HUMAN
905-996
92
0
-
-
2.19
ENST00000359671
19
ENSE00001146122
chr2:
216269378-216269112
267
FINC_HUMAN
996-1085
90
0
-
-
2.20
ENST00000359671
20
ENSE00001146112
chr2:
216264074-216263980
95
FINC_HUMAN
1085-1116
32
0
-
-
2.21b
ENST00000359671
21b
ENSE00000965892
chr2:
216262571-216262403
169
FINC_HUMAN
1117-1173
57
0
-
-
2.22
ENST00000359671
22
ENSE00001146105
chr2:
216261946-216261860
87
FINC_HUMAN
1173-1202
30
0
-
-
2.23
ENST00000359671
23
ENSE00001342408
chr2:
216259442-216259251
192
FINC_HUMAN
1202-1266
65
0
-
-
2.25c
ENST00000359671
25c
ENSE00001146412
chr2:
216256537-216256355
183
FINC_HUMAN
1266-1327
62
0
-
-
2.26
ENST00000359671
26
ENSE00001342403
chr2:
216253024-216252935
90
FINC_HUMAN
1327-1357
31
0
-
-
2.27a
ENST00000359671
27a
ENSE00001342401
chr2:
216251681-216251412
270
FINC_HUMAN
1357-1447
91
0
-
-
2.28a
ENST00000359671
28a
ENSE00001342398
chr2:
216249699-216249583
117
FINC_HUMAN
1447-1486
40
0
-
-
2.28c
ENST00000359671
28c
ENSE00001146062
chr2:
216248907-216248743
165
FINC_HUMAN
1486-1541
56
0
-
-
2.29
ENST00000359671
29
ENSE00001342394
chr2:
216248206-216248051
156
FINC_HUMAN
1541-1593
53
0
-
-
2.30a
ENST00000359671
30a
ENSE00001146049
chr2:
216247048-216246935
114
FINC_HUMAN
1593-1631
39
0
-
-
2.30f
ENST00000359671
30f
ENSE00001245789
chr2:
216245803-216245534
270
FINC_HUMAN
1631-1721
91
0
-
-
2.30h
ENST00000359671
30h
ENSE00001342389
chr2:
216244040-216243853
188
FINC_HUMAN
1721-1783
63
0
-
-
2.31
ENST00000359671
31
ENSE00001342388
chr2:
216242985-216242898
88
FINC_HUMAN
1784-1813
30
0
-
-
2.32
ENST00000359671
32
ENSE00001245772
chr2:
216241397-216241221
177
FINC_HUMAN
1813-1872
60
0
-
-
2.33c
ENST00000359671
33c
ENSE00001342219
chr2:
216240441-216240352
90
FINC_HUMAN
1872-1902
31
0
-
-
2.34
ENST00000359671
34
ENSE00001145995
chr2:
216240116-216239937
180
FINC_HUMAN
1902-1962
61
0
-
-
2.35
ENST00000359671
35
ENSE00001145987
chr2:
216238134-216238045
90
FINC_HUMAN
1962-1992
31
0
-
-
2.36d
ENST00000359671
36d
ENSE00001145978
chr2:
216237098-216236632
467
FINC_HUMAN
1992-2147
156
0
-
-
2.37d
ENST00000359671
37d
ENSE00001342210
chr2:
216235155-216235017
139
FINC_HUMAN
2148-2194
47
0
-
-
2.38a
ENST00000359671
38a
ENSE00001603320
chr2:
216232750-216232586
165
FINC_HUMAN
2194-2249
56
0
-
-
2.39c
ENST00000359671
39c
ENSE00001598844
chr2:
216230353-216230228
126
FINC_HUMAN
2249-2291
43
0
-
-
2.40a
ENST00000359671
40a
ENSE00001649647
chr2:
216229708-216229602
107
FINC_HUMAN
2291-2326
36
0
-
-
2.41b
ENST00000359671
41b
ENSE00001740966
chr2:
216226802-216226692
111
FINC_HUMAN
2327-2363
37
0
-
-
2.42f
ENST00000359671
42f
ENSE00001696465
chr2:
216226349-216225181
1169
FINC_HUMAN
2364-2386
23
0
-
-
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