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3EJE
Asym. Unit
Info
Asym.Unit (327 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (84 KB)
Biol.Unit 3 (84 KB)
Biol.Unit 4 (84 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF P450BIOI IN COMPLEX WITH OCTADEC-9Z-ENOIC ACID LIGATED ACYL CARRIER PROTEIN
Authors
:
M. J. Cryle, I. Schlichting
Date
:
18 Sep 08 (Deposition) - 07 Oct 08 (Release) - 08 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Protein-Protein Complex, Cytochrome P450 Fold, Carrier Protein, 4- Helix Bundle, Fatty Acid Biosynthesis, Lipid Synthesis, Phosphopantetheine, Biotin Biosynthesis, Heme, Iron, Metal-Binding, Monooxygenase, Oxidoreductase, Oxidoreductase-Lipid Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Cryle, I. Schlichting
Structural Insights From A P450 Carrier Protein Complex Reveal How Specificity Is Achieved In The P450(Bioi) Acp Complex.
Proc. Natl. Acad. Sci. Usa V. 105 15696 2008
[
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2a: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGa)
2b: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGb)
2c: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGc)
2d: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGd)
2e: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGe)
2f: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGf)
2g: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGg)
3a: S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMET... (ZMOa)
3b: S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMET... (ZMOb)
3c: S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMET... (ZMOc)
3d: S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMET... (ZMOd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
HTG
7
Ligand/Ion
HEPTYL 1-THIOHEXOPYRANOSIDE
3
ZMO
4
Ligand/Ion
S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] (9Z)-OCTADEC-9-ENETHIOATE
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:56 , HOH A:102 , HOH A:103 , HOH A:104 , HOH A:107 , HOH A:110 , HOH A:119 , HOH A:125 , TYR B:36 , ARG B:59 , THR B:60 , PRO B:61 , LEU B:62 , PRO B:63 , ILE B:168 , PHE B:170 , ARG B:172 , ILE B:233 , ALA B:234 , THR B:281 , MET B:283 , THR B:284 , ALA B:285 , GLN B:304 , TYR B:306 , HEM B:405 , HOH B:436
BINDING SITE FOR RESIDUE ZMO A 99
02
AC2
SOFTWARE
PHE A:48 , THR A:59 , VAL A:63 , ALA A:79 , GLU A:80 , ILE A:82 , THR A:83 , HOH A:120
BINDING SITE FOR RESIDUE HTG A 100
03
AC3
SOFTWARE
ZMO A:99 , MET B:80 , LEU B:81 , HIS B:88 , ARG B:92 , LEU B:231 , ALA B:234 , GLY B:235 , THR B:238 , THR B:239 , LEU B:275 , PRO B:280 , THR B:281 , THR B:284 , ARG B:286 , LEU B:309 , SER B:336 , PHE B:337 , GLY B:338 , HIS B:342 , CYS B:344 , LEU B:345 , LEU B:349 , HOH B:427 , HOH B:448
BINDING SITE FOR RESIDUE HEM B 405
04
AC4
SOFTWARE
HOH A:137 , LYS B:30 , GLY B:31 , PRO B:37 , GLY B:38 , TRP B:39 , GLU B:303
BINDING SITE FOR RESIDUE HTG B 417
05
AC5
SOFTWARE
SER C:56 , HOH C:103 , HOH C:106 , HOH C:133 , HOH C:134 , TYR D:36 , ARG D:59 , THR D:60 , PRO D:61 , PRO D:63 , MET D:79 , LEU D:164 , ILE D:165 , THR D:167 , ILE D:168 , PHE D:170 , ARG D:172 , MET D:283 , THR D:284 , TYR D:306 , HEM D:405 , HOH D:491
BINDING SITE FOR RESIDUE ZMO C 99
06
AC6
SOFTWARE
PHE C:48 , THR C:59 , VAL C:60 , ALA C:79 , GLU C:80 , ILE C:82 , HOH D:477
BINDING SITE FOR RESIDUE HTG C 100
07
AC7
SOFTWARE
ZMO C:99 , MET D:80 , LEU D:81 , HIS D:88 , ARG D:92 , PHE D:99 , ILE D:143 , LEU D:231 , ALA D:234 , THR D:238 , THR D:239 , LEU D:242 , THR D:281 , THR D:284 , ARG D:286 , SER D:336 , PHE D:337 , GLY D:338 , HIS D:341 , HIS D:342 , CYS D:344 , LEU D:345 , GLY D:346 , ALA D:350 , HOH D:432 , HOH D:447 , HOH D:474
BINDING SITE FOR RESIDUE HEM D 405
08
AC8
SOFTWARE
ALA D:7 , SER D:8 , PHE D:11 , PHE D:18 , PHE D:381 , ASN G:45
BINDING SITE FOR RESIDUE HTG D 417
09
AC9
SOFTWARE
SER E:56 , HOH E:101 , HOH E:107 , HOH E:109 , HOH E:111 , HOH E:125 , HOH E:126 , HOH E:145 , TYR F:36 , ARG F:59 , THR F:60 , PRO F:61 , LEU F:62 , PRO F:63 , LEU F:164 , ILE F:168 , PHE F:170 , ARG F:172 , ILE F:233 , MET F:283 , GLN F:304 , TYR F:306 , HEM F:405 , HOH F:549
BINDING SITE FOR RESIDUE ZMO E 99
10
BC1
SOFTWARE
PHE E:48 , THR E:59 , VAL E:60 , ALA E:79 , GLU E:80 , ILE E:82 , THR E:83 , HOH E:114 , HOH E:115
BINDING SITE FOR RESIDUE HTG E 100
11
BC2
SOFTWARE
ZMO E:99 , MET F:80 , LEU F:81 , HIS F:88 , ARG F:92 , PHE F:99 , ILE F:143 , LEU F:231 , ALA F:234 , THR F:238 , THR F:239 , LEU F:242 , PRO F:280 , THR F:281 , THR F:284 , ARG F:286 , LEU F:309 , SER F:336 , PHE F:337 , GLY F:338 , HIS F:342 , CYS F:344 , HOH F:417 , HOH F:434
BINDING SITE FOR RESIDUE HEM F 405
12
BC3
SOFTWARE
SER G:56 , HOH G:103 , HOH G:124 , HOH G:129 , TYR H:36 , ARG H:59 , THR H:60 , PRO H:61 , PRO H:63 , LEU H:164 , THR H:167 , ILE H:168 , PHE H:170 , ARG H:172 , ALA H:234 , THR H:281 , MET H:283 , THR H:284 , TYR H:306 , HEM H:405 , HOH H:497
BINDING SITE FOR RESIDUE ZMO G 99
13
BC4
SOFTWARE
PHE G:48 , THR G:59 , ALA G:79 , GLU G:80 , ILE G:82
BINDING SITE FOR RESIDUE HTG G 100
14
BC5
SOFTWARE
ZMO G:99 , MET H:80 , LEU H:81 , HIS H:88 , ARG H:92 , PHE H:99 , ALA H:234 , GLY H:235 , THR H:238 , THR H:239 , LEU H:275 , PRO H:280 , THR H:281 , THR H:284 , ARG H:286 , LEU H:309 , SER H:336 , PHE H:337 , GLY H:338 , HIS H:342 , CYS H:344 , GLY H:346 , HOH H:427 , HOH H:438
BINDING SITE FOR RESIDUE HEM H 405
15
BC6
SOFTWARE
ASN C:45 , PHE H:11 , PHE H:18
BINDING SITE FOR RESIDUE HTG H 417
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: CARRIER (A:21-95,C:21-95,E:21-93,G:21-92)
2: PHOSPHOPANTETHEINE (A:51-66,C:51-66,E:51-66,G:51-66)
3: CYTOCHROME_P450 (B:337-346,D:337-346,F:337-346,H:33...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARRIER
PS50075
Carrier protein (CP) domain profile.
ACP_ECOLI
2-77
4
A:21-95
C:21-95
E:21-93
G:21-92
2
PHOSPHOPANTETHEINE
PS00012
Phosphopantetheine attachment site.
ACP_ECOLI
32-47
4
A:51-66
C:51-66
E:51-66
G:51-66
3
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
BIOI_BACSU
338-347
4
B:337-346
D:337-346
F:337-346
H:337-346
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3ejea_ (A:)
1b: SCOP_d3ejec_ (C:)
1c: SCOP_d3ejee_ (E:)
1d: SCOP_d3ejeg_ (G:)
2a: SCOP_d3ejeb_ (B:)
2b: SCOP_d3ejef_ (F:)
2c: SCOP_d3ejeh_ (H:)
2d: SCOP_d3ejed_ (D:)
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Classes
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Acyl carrier protein-like
(148)
Superfamily
:
ACP-like
(68)
Family
:
Acyl-carrier protein (ACP)
(40)
Protein domain
:
Acyl carrier protein
(20)
Escherichia coli [TaxId: 562]
(14)
1a
d3ejea_
A:
1b
d3ejec_
C:
1c
d3ejee_
E:
1d
d3ejeg_
G:
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
automated matches
(157)
Protein domain
:
automated matches
(157)
Bacillus subtilis [TaxId: 1423]
(3)
2a
d3ejeb_
B:
2b
d3ejef_
F:
2c
d3ejeh_
H:
2d
d3ejed_
D:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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