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3EJB
Asym. Unit
Info
Asym.Unit (338 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (87 KB)
Biol.Unit 3 (86 KB)
Biol.Unit 4 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF P450BIOI IN COMPLEX WITH TETRADECANOIC ACID LIGATED ACYL CARRIER PROTEIN
Authors
:
M. J. Cryle, I. Schlichting
Date
:
18 Sep 08 (Deposition) - 07 Oct 08 (Release) - 24 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Protein-Protein Complex, Cytochrome P450 Fold, Carrier Protein, 4- Helix Bundle, Fatty Acid Biosynthesis, Lipid Synthesis, Phosphopantetheine, Biotin Biosynthesis, Heme, Iron, Metal-Binding, Monooxygenase, Oxidoreductase, Oxidoreductase-Lipid Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Cryle, I. Schlichting
Structural Insights From A P450 Carrier Protein Complex Reveal How Specificity Is Achieved In The P450(Bioi) Acp Complex.
Proc. Natl. Acad. Sci. Usa V. 105 15696 2008
[
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Hetero Components
(4, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3a: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGa)
3b: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGb)
3c: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGc)
3d: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGd)
3e: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGe)
3f: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGf)
3g: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGg)
3h: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGh)
4a: S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMET... (ZMPa)
4b: S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMET... (ZMPb)
4c: S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMET... (ZMPc)
4d: S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMET... (ZMPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
HTG
8
Ligand/Ion
HEPTYL 1-THIOHEXOPYRANOSIDE
4
ZMP
4
Ligand/Ion
S-[2-({N-[(2S)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRADECANETHIOATE
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:56 , HOH A:102 , HOH A:103 , HOH A:106 , HOH A:118 , HOH A:119 , HOH A:155 , HOH A:177 , TYR B:36 , ARG B:59 , THR B:60 , PRO B:61 , PRO B:63 , ILE B:168 , ARG B:172 , MET B:283 , THR B:284 , ALA B:285 , TYR B:306 , HEM B:405 , HOH B:458
BINDING SITE FOR RESIDUE ZMP A 99
02
AC2
SOFTWARE
PHE A:48 , THR A:59 , ALA A:79 , GLU A:80 , ILE A:82 , THR A:83 , HOH A:133 , HOH A:134 , HOH B:660
BINDING SITE FOR RESIDUE HTG A 100
03
AC3
SOFTWARE
GLU A:80 , GLY B:31 , SER B:32 , PRO B:37
BINDING SITE FOR RESIDUE HTG A 101
04
AC4
SOFTWARE
ZMP A:99 , MET B:80 , LEU B:81 , HIS B:88 , ARG B:92 , ALA B:234 , GLY B:235 , THR B:238 , THR B:239 , LEU B:275 , THR B:281 , THR B:284 , ARG B:286 , LEU B:309 , SER B:336 , PHE B:337 , GLY B:338 , HIS B:342 , CYS B:344 , HOH B:413 , HOH B:423
BINDING SITE FOR RESIDUE HEM B 405
05
AC5
SOFTWARE
HIS B:253 , GLU B:255
BINDING SITE FOR RESIDUE CL B 406
06
AC6
SOFTWARE
SER C:56 , HOH C:104 , HOH C:112 , HOH C:120 , HOH C:125 , HOH C:129 , HOH C:135 , HOH C:136 , HOH C:153 , TYR D:36 , ARG D:59 , THR D:60 , PRO D:61 , PRO D:63 , ILE D:168 , PHE D:170 , ARG D:172 , THR D:284 , TYR D:306 , HEM D:405
BINDING SITE FOR RESIDUE ZMP C 99
07
AC7
SOFTWARE
PHE C:48 , THR C:59 , VAL C:63 , LEU C:66 , ALA C:79 , GLU C:80 , ILE C:82 , HOH C:124 , HOH D:452
BINDING SITE FOR RESIDUE HTG C 100
08
AC8
SOFTWARE
ZMP C:99 , MET D:80 , LEU D:81 , HIS D:88 , ARG D:92 , PHE D:99 , ILE D:143 , LEU D:231 , ALA D:234 , THR D:238 , THR D:239 , LEU D:242 , THR D:281 , THR D:284 , ARG D:286 , LEU D:309 , SER D:336 , PHE D:337 , GLY D:338 , HIS D:342 , CYS D:344 , GLY D:346 , ALA D:350 , HOH D:422 , HOH D:423
BINDING SITE FOR RESIDUE HEM D 405
09
AC9
SOFTWARE
PHE D:11 , PHE D:381 , ASN G:45
BINDING SITE FOR RESIDUE HTG D 406
10
BC1
SOFTWARE
SER E:56 , HOH E:101 , HOH E:104 , HOH E:106 , HOH E:107 , HOH E:108 , HOH E:112 , HOH E:124 , HOH E:144 , TYR F:36 , ARG F:59 , THR F:60 , PRO F:61 , PRO F:63 , ILE F:168 , ARG F:172 , MET F:283 , TYR F:306 , HEM F:405 , HOH F:485
BINDING SITE FOR RESIDUE ZMP E 99
11
BC2
SOFTWARE
PHE E:48 , THR E:59 , VAL E:60 , VAL E:63 , LEU E:66 , ALA E:79 , ILE E:82 , HOH E:130 , HOH E:156 , HOH E:157 , HOH F:627
BINDING SITE FOR RESIDUE HTG E 100
12
BC3
SOFTWARE
ZMP E:99 , MET F:80 , LEU F:81 , HIS F:88 , ARG F:92 , ILE F:143 , LEU F:231 , ALA F:234 , THR F:238 , THR F:239 , LEU F:242 , THR F:281 , THR F:284 , ARG F:286 , SER F:336 , PHE F:337 , GLY F:338 , HIS F:341 , HIS F:342 , CYS F:344 , ALA F:350 , HOH F:425 , HOH F:426
BINDING SITE FOR RESIDUE HEM F 405
13
BC4
SOFTWARE
TYR F:107 , ILE F:146 , GLN F:204 , ASP F:205
BINDING SITE FOR RESIDUE HTG F 406
14
BC5
SOFTWARE
HIS F:253 , GLU F:255
BINDING SITE FOR RESIDUE CL F 407
15
BC6
SOFTWARE
SER G:56 , HOH G:119 , HOH G:128 , HOH G:133 , HOH G:134 , HOH G:153 , HOH G:174 , TYR H:36 , ARG H:59 , THR H:60 , PRO H:61 , PRO H:63 , ILE H:165 , ILE H:168 , PHE H:170 , ARG H:172 , LEU H:230 , MET H:283 , THR H:284 , TYR H:306 , HEM H:405 , HOH H:557
BINDING SITE FOR RESIDUE ZMP G 99
16
BC7
SOFTWARE
PHE G:48 , THR G:59 , LEU G:66 , ALA G:79 , GLU G:80 , ILE G:82 , THR G:83 , HOH G:131 , HOH G:157 , HOH H:585
BINDING SITE FOR RESIDUE HTG G 100
17
BC8
SOFTWARE
ZMP G:99 , MET H:80 , LEU H:81 , HIS H:88 , ARG H:92 , ALA H:234 , THR H:238 , THR H:239 , LEU H:275 , PRO H:280 , THR H:281 , THR H:284 , ARG H:286 , LEU H:309 , SER H:336 , PHE H:337 , GLY H:338 , HIS H:342 , CYS H:344 , LEU H:345 , GLY H:346 , ALA H:350 , HOH H:414 , HOH H:560
BINDING SITE FOR RESIDUE HEM H 405
18
BC9
SOFTWARE
ASN C:45 , HOH C:137 , ALA H:7 , PHE H:11 , PHE H:18
BINDING SITE FOR RESIDUE HTG H 406
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: CARRIER (A:21-95,C:21-93,E:21-95,G:21-93)
2: PHOSPHOPANTETHEINE (A:51-66,C:51-66,E:51-66,G:51-66)
3: CYTOCHROME_P450 (B:337-346,D:337-346,F:337-346,H:33...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARRIER
PS50075
Carrier protein (CP) domain profile.
ACP_ECOLI
2-77
4
A:21-95
C:21-93
E:21-95
G:21-93
2
PHOSPHOPANTETHEINE
PS00012
Phosphopantetheine attachment site.
ACP_ECOLI
32-47
4
A:51-66
C:51-66
E:51-66
G:51-66
3
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
BIOI_BACSU
338-347
4
B:337-346
D:337-346
F:337-346
H:337-346
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3ejba_ (A:)
1b: SCOP_d3ejbg_ (G:)
1c: SCOP_d3ejbc_ (C:)
1d: SCOP_d3ejbe_ (E:)
2a: SCOP_d3ejbb_ (B:)
2b: SCOP_d3ejbd_ (D:)
2c: SCOP_d3ejbf_ (F:)
2d: SCOP_d3ejbh_ (H:)
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(
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(
)
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(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Acyl carrier protein-like
(148)
Superfamily
:
ACP-like
(68)
Family
:
Acyl-carrier protein (ACP)
(40)
Protein domain
:
Acyl carrier protein
(20)
Escherichia coli [TaxId: 562]
(14)
1a
d3ejba_
A:
1b
d3ejbg_
G:
1c
d3ejbc_
C:
1d
d3ejbe_
E:
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
automated matches
(157)
Protein domain
:
automated matches
(157)
Bacillus subtilis [TaxId: 1423]
(3)
2a
d3ejbb_
B:
2b
d3ejbd_
D:
2c
d3ejbf_
F:
2d
d3ejbh_
H:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asym.Unit (338 KB)
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