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3EI2
Biol. Unit 1
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Asym.Unit (257 KB)
Biol.Unit 1 (250 KB)
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Title
:
STRUCTURE OF HSDDB1-DRDDB2 BOUND TO A 16 BP ABASIC SITE CONTAINING DNA-DUPLEX
Authors
:
A. Scrima, N. H. Thoma
Date
:
15 Sep 08 (Deposition) - 20 Jan 09 (Release) - 20 Jan 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,G,H
Biol. Unit 1: A,B,G,H (1x)
Keywords
:
Uv-Damage, Ddb, Nucleotide Excision Repair, Xeroderma Pigmentosum, Alternative Splicing, Disease Mutation, Dna Damage, Dna Repair, Dna-Binding, Nucleus, Phosphoprotein, Polymorphism, Wd Repeat, Ubl Conjugation Pathway, Dna Binding Protein/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Scrima, R. Konickova, B. K. Czyzewski, Y. Kawasaki, P. D. Jeffrey, R. Groisman, Y. Nakatani, S. Iwai, N. P. Pavletich, N. H. Thoma
Structural Basis Of Uv Dna-Damage Recognition By The Ddb1-Ddb2 Complex.
Cell(Cambridge, Mass. ) V. 135 1213 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSP... (3DRa)
2a: TETRAETHYLENE GLYCOL (PG4a)
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No.
Name
Count
Type
Full Name
1
3DR
1
Mod. Nucleotide
1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
2
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
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Sites
(1, 1)
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1: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ARG A:270 , TYR A:316 , ASN A:337 , GLU A:896
BINDING SITE FOR RESIDUE PG4 A1141
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SAPs(SNPs)/Variants
(1, 1)
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(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_023074 (L427F, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_023074
L
427
F
DDB1_HUMAN
Polymorphism
28720299
A
L
427
F
SNP/SAP Summary Statistics
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PROSITE Patterns/Profiles
(1, 1)
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All PROSITE Patterns/Profiles
1: WD_REPEATS_1 (B:294-308)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
DDB2_DANRE
260-274
1
B:294-308
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Exons
(0, 0)
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Asym.Unit (257 KB)
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