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3EGT
Asym. Unit
Info
Asym.Unit (129 KB)
Biol.Unit 1 (123 KB)
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(1)
Title
:
T. BRUCEI FARNESYL DIPHOSPHATE SYNTHASE COMPLEXED WITH BISPHOSPHONATE BPH-722
Authors
:
R. Cao, Y. Gao, H. Robinson, E. Oldfield
Date
:
11 Sep 08 (Deposition) - 05 May 09 (Release) - 05 May 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Bisphosphonate Complex, Isoprene Biosynthesis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhang, R. Cao, F. Yin, M. P. Hudock, R. T. Guo, K. Krysiak, S. Mukherjee, Y. G. Gao, H. Robinson, Y. Song, J. H. No, K. Bergan, A. Leon, L. Cass, A. Goddard, T. K. Chang, F. Y. Lin, E. Van Beek, S. Papapoulos, A. H. Wang, T. Kubo, M. Ochi, D. Mukkamala, E. Oldfield
Lipophilic Bisphosphonates As Dual Farnesyl/Geranylgeranyl Diphosphate Synthase Inhibitors: An X-Ray And Nmr Investigation.
J. Am. Chem. Soc. V. 131 5153 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 1-(2,2-DIPHOSPHONOETHYL)-3-(HEPTYL... (722a)
1b: 1-(2,2-DIPHOSPHONOETHYL)-3-(HEPTYL... (722b)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
722
2
Ligand/Ion
1-(2,2-DIPHOSPHONOETHYL)-3-(HEPTYLOXY)PYRIDINIUM
2
MG
6
Ligand/Ion
MAGNESIUM ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:103 , ASP A:107 , 722 A:3001 , MG A:3004 , HOH A:3023 , HOH A:3121
BINDING SITE FOR RESIDUE MG A3002
2
AC2
SOFTWARE
ASP A:255 , 722 A:3001 , HOH A:3005 , HOH A:3031 , HOH A:3127
BINDING SITE FOR RESIDUE MG A3003
3
AC3
SOFTWARE
ASP A:103 , ASP A:107 , 722 A:3001 , MG A:3002 , HOH A:3011 , HOH A:3014 , HOH A:3059
BINDING SITE FOR RESIDUE MG A3004
4
AC4
SOFTWARE
TYR A:99 , ASP A:103 , MET A:106 , ASP A:107 , ARG A:112 , GLN A:172 , LYS A:212 , THR A:213 , ASP A:255 , LYS A:269 , MG A:3002 , MG A:3003 , MG A:3004 , HOH A:3005 , HOH A:3011 , HOH A:3014 , HOH A:3019 , HOH A:3023 , HOH A:3031 , HOH A:3035 , HOH A:3112 , HOH A:3121 , HOH A:3127 , ASN B:131 , LEU B:134
BINDING SITE FOR RESIDUE 722 A3001
5
AC5
SOFTWARE
ASP B:103 , ASP B:107 , 722 B:4001 , MG B:4004 , HOH B:4056 , HOH B:4115
BINDING SITE FOR RESIDUE MG B4002
6
AC6
SOFTWARE
ASP B:255 , 722 B:4001 , HOH B:4010 , HOH B:4116 , HOH B:4128
BINDING SITE FOR RESIDUE MG B4003
7
AC7
SOFTWARE
ASP B:103 , ASP B:107 , 722 B:4001 , MG B:4002 , HOH B:4012 , HOH B:4038 , HOH B:4124
BINDING SITE FOR RESIDUE MG B4004
8
AC8
SOFTWARE
ASN A:131 , LEU A:134 , TYR B:99 , GLU B:102 , ASP B:103 , MET B:106 , ASP B:107 , ARG B:112 , GLN B:172 , LYS B:212 , THR B:213 , ASP B:255 , LYS B:269 , MG B:4002 , MG B:4003 , MG B:4004 , HOH B:4010 , HOH B:4012 , HOH B:4016 , HOH B:4038 , HOH B:4056 , HOH B:4080 , HOH B:4115 , HOH B:4116 , HOH B:4128
BINDING SITE FOR RESIDUE 722 B4001
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3egta_ (A:)
1b: SCOP_d3egtb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Terpenoid synthases
(196)
Superfamily
:
Terpenoid synthases
(196)
Family
:
automated matches
(68)
Protein domain
:
automated matches
(68)
Trypanosome (Trypanosoma brucei) [TaxId: 5691]
(9)
1a
d3egta_
A:
1b
d3egtb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3egtA00 (A:1-367)
1b: CATH_3egtB00 (B:1-367)
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Organisms
(
)
(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Farnesyl Diphosphate Synthase
(109)
Homologous Superfamily
:
Farnesyl Diphosphate Synthase
(109)
Trypanosoma brucei. Organism_taxid: 5691.
(9)
1a
3egtA00
A:1-367
1b
3egtB00
B:1-367
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (129 KB)
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