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3EGH
Biol. Unit 2
Info
Asym.Unit (153 KB)
Biol.Unit 1 (141 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COMPLEX BETWEEN PROTEIN PHOSPHATASE 1 ALPHA (PP1), THE PP1 BINDING AND PDZ DOMAINS OF SPINOPHILIN AND THE SMALL NATURAL MOLECULAR TOXIN NODULARIN-R
Authors
:
M. J. Ragusa, R. Page, W. Peti
Date
:
10 Sep 08 (Deposition) - 23 Mar 10 (Release) - 10 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A,C,E (1x)
Biol. Unit 3: B,D,F (1x)
Keywords
:
Pp1, Serine/Threonine Phosphatase, Post Synaptic Density, Inhibitor, Carbohydrate Metabolism, Cell Cycle, Cell Division, Glycogen Metabolism, Hydrolase, Iron, Manganese, Metal-Binding, Phosphoprotein, Protein Phosphatase, Actin-Binding, Cell Junction, Cell Projection, Cytoskeleton, Developmental Protein, Differentiation, Neurogenesis, Nucleus, Synapse, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Ragusa, B. Dancheck, D. A. Critton, A. C. Nairn, R. Page, W. Peti
Spinophilin Directs Protein Phosphatase 1 Specificity By Blocking Substrate Binding Sites.
Nat. Struct. Mol. Biol. V. 17 459 2010
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Hetero Components
(5, 8)
Info
All Hetero Components
1a: (2S,3S,4E,6E,8S,9S)-3-AMINO-9-METH... (1ZNa)
1b: (2S,3S,4E,6E,8S,9S)-3-AMINO-9-METH... (1ZNb)
2a: 3-METHYL-BETA-D-ASPARTIC ACID (ACBa)
2b: 3-METHYL-BETA-D-ASPARTIC ACID (ACBb)
3a: GAMMA-D-GLUTAMIC ACID (FGAa)
3b: GAMMA-D-GLUTAMIC ACID (FGAb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
5a: N-METHYLDEHYDROBUTYRINE (MDHa)
5b: N-METHYLDEHYDROBUTYRINE (MDHb)
6a: MANGANESE (II) ION (MNa)
6b: MANGANESE (II) ION (MNb)
6c: MANGANESE (II) ION (MNc)
6d: MANGANESE (II) ION (MNd)
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No.
Name
Count
Type
Full Name
1
1ZN
1
Mod. Amino Acid
(2S,3S,4E,6E,8S,9S)-3-AMINO-9-METHOXY-2,6,8-TRIMETHYL-10-PHENYLDECA-4,6-DIENOIC ACID
2
ACB
1
Mod. Amino Acid
3-METHYL-BETA-D-ASPARTIC ACID
3
FGA
1
Mod. Amino Acid
GAMMA-D-GLUTAMIC ACID
4
GOL
4
Ligand/Ion
GLYCEROL
5
MDH
1
Mod. Amino Acid
N-METHYLDEHYDROBUTYRINE
6
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC8 (SOFTWARE)
7: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:20 , PHE A:81
BINDING SITE FOR RESIDUE GOL A 334
2
AC2
SOFTWARE
PRO A:58 , LEU A:59 , LYS A:60 , SER A:85 , ASN A:86 , VAL A:285
BINDING SITE FOR RESIDUE GOL A 335
3
AC3
SOFTWARE
GLN A:49 , GLU A:54 , GLU A:116 , HOH A:548
BINDING SITE FOR RESIDUE GOL A 336
4
AC4
SOFTWARE
ASP A:64 , HIS A:66 , ASP A:92 , MN A:404
BINDING SITE FOR RESIDUE MN A 402
5
AC5
SOFTWARE
ASP A:92 , ASN A:124 , HIS A:173 , HIS A:248
BINDING SITE FOR RESIDUE MN A 404
6
AC8
SOFTWARE
ASP B:253 , HOH B:636 , HOH B:640 , HOH B:641 , MET C:513 , GLY C:514 , GLY C:520
BINDING SITE FOR RESIDUE GOL C 1
7
AC9
SOFTWARE
ARG A:96 , SER A:129 , TYR A:134 , VAL A:195 , PRO A:196 , ASP A:197 , TRP A:206 , ARG A:221 , VAL A:223 , TYR A:272 , CYS A:273 , GLU A:275 , PHE A:276
BINDING SITE FOR CHAIN E OF nodularin R
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: SER_THR_PHOSPHATASE (A:121-126)
2: PDZ (C:496-583)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SER_THR_PHOSPHATASE
PS00125
Serine/threonine specific protein phosphatases signature.
PP1A_HUMAN
121-126
1
A:121-126
-
2
PDZ
PS50106
PDZ domain profile.
NEB2_RAT
496-584
1
C:496-583
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_3eghA00 (A:7-300)
1b: CATH_3eghB00 (B:7-300)
2a: CATH_3eghC01 (C:475-583)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Human (Homo sapiens)
(36)
1a
3eghA00
A:7-300
1b
3eghB00
B:7-300
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
2a
3eghC01
C:475-583
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (153 KB)
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