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3EGH
Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (141 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COMPLEX BETWEEN PROTEIN PHOSPHATASE 1 ALPHA (PP1), THE PP1 BINDING AND PDZ DOMAINS OF SPINOPHILIN AND THE SMALL NATURAL MOLECULAR TOXIN NODULARIN-R
Authors
:
M. J. Ragusa, R. Page, W. Peti
Date
:
10 Sep 08 (Deposition) - 23 Mar 10 (Release) - 10 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A,C,E (1x)
Biol. Unit 3: B,D,F (1x)
Keywords
:
Pp1, Serine/Threonine Phosphatase, Post Synaptic Density, Inhibitor, Carbohydrate Metabolism, Cell Cycle, Cell Division, Glycogen Metabolism, Hydrolase, Iron, Manganese, Metal-Binding, Phosphoprotein, Protein Phosphatase, Actin-Binding, Cell Junction, Cell Projection, Cytoskeleton, Developmental Protein, Differentiation, Neurogenesis, Nucleus, Synapse, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Ragusa, B. Dancheck, D. A. Critton, A. C. Nairn, R. Page, W. Peti
Spinophilin Directs Protein Phosphatase 1 Specificity By Blocking Substrate Binding Sites.
Nat. Struct. Mol. Biol. V. 17 459 2010
[
close entry info
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Hetero Components
(6, 16)
Info
All Hetero Components
1a: (2S,3S,4E,6E,8S,9S)-3-AMINO-9-METH... (1ZNa)
1b: (2S,3S,4E,6E,8S,9S)-3-AMINO-9-METH... (1ZNb)
2a: 3-METHYL-BETA-D-ASPARTIC ACID (ACBa)
2b: 3-METHYL-BETA-D-ASPARTIC ACID (ACBb)
3a: GAMMA-D-GLUTAMIC ACID (FGAa)
3b: GAMMA-D-GLUTAMIC ACID (FGAb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
5a: N-METHYLDEHYDROBUTYRINE (MDHa)
5b: N-METHYLDEHYDROBUTYRINE (MDHb)
6a: MANGANESE (II) ION (MNa)
6b: MANGANESE (II) ION (MNb)
6c: MANGANESE (II) ION (MNc)
6d: MANGANESE (II) ION (MNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1ZN
2
Mod. Amino Acid
(2S,3S,4E,6E,8S,9S)-3-AMINO-9-METHOXY-2,6,8-TRIMETHYL-10-PHENYLDECA-4,6-DIENOIC ACID
2
ACB
2
Mod. Amino Acid
3-METHYL-BETA-D-ASPARTIC ACID
3
FGA
2
Mod. Amino Acid
GAMMA-D-GLUTAMIC ACID
4
GOL
4
Ligand/Ion
GLYCEROL
5
MDH
2
Mod. Amino Acid
N-METHYLDEHYDROBUTYRINE
6
MN
4
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:20 , PHE A:81
BINDING SITE FOR RESIDUE GOL A 334
02
AC2
SOFTWARE
PRO A:58 , LEU A:59 , LYS A:60 , SER A:85 , ASN A:86 , VAL A:285
BINDING SITE FOR RESIDUE GOL A 335
03
AC3
SOFTWARE
GLN A:49 , GLU A:54 , GLU A:116 , HOH A:548
BINDING SITE FOR RESIDUE GOL A 336
04
AC4
SOFTWARE
ASP A:64 , HIS A:66 , ASP A:92 , MN A:404
BINDING SITE FOR RESIDUE MN A 402
05
AC5
SOFTWARE
ASP A:92 , ASN A:124 , HIS A:173 , HIS A:248
BINDING SITE FOR RESIDUE MN A 404
06
AC6
SOFTWARE
ASP B:64 , HIS B:66 , ASP B:92
BINDING SITE FOR RESIDUE MN B 403
07
AC7
SOFTWARE
ASP B:92 , ASN B:124 , HIS B:173 , HIS B:248
BINDING SITE FOR RESIDUE MN B 405
08
AC8
SOFTWARE
ASP B:253 , HOH B:636 , HOH B:640 , HOH B:641 , MET C:513 , GLY C:514 , GLY C:520
BINDING SITE FOR RESIDUE GOL C 1
09
AC9
SOFTWARE
ARG A:96 , SER A:129 , TYR A:134 , VAL A:195 , PRO A:196 , ASP A:197 , TRP A:206 , ARG A:221 , VAL A:223 , TYR A:272 , CYS A:273 , GLU A:275 , PHE A:276
BINDING SITE FOR CHAIN E OF nodularin R
10
BC1
SOFTWARE
ARG B:96 , SER B:129 , TYR B:134 , VAL B:195 , PRO B:196 , ASP B:197 , TRP B:206 , ARG B:221 , TYR B:272 , CYS B:273
BINDING SITE FOR CHAIN F OF nodularin R
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: SER_THR_PHOSPHATASE (A:121-126,B:121-126)
2: PDZ (C:496-583)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SER_THR_PHOSPHATASE
PS00125
Serine/threonine specific protein phosphatases signature.
PP1A_HUMAN
121-126
2
A:121-126
B:121-126
2
PDZ
PS50106
PDZ domain profile.
NEB2_RAT
496-584
1
C:496-583
[
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Exons
(7, 14)
Info
All Exons
Exon 1.3a (A:7-19 | B:7-19)
Exon 1.4d (A:19-63 | B:19-63)
Exon 1.4f (A:63-140 | B:63-140)
Exon 1.5a (A:140-175 | B:140-175)
Exon 1.6a (A:175-249 | B:175-249)
Exon 1.6d (A:250-294 | B:250-294)
Exon 1.7c (A:295-300 | B:295-300)
View:
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4d
3: Boundary 1.4d/1.4f
4: Boundary 1.4f/1.5a
5: Boundary 1.5a/1.6a
6: Boundary 1.6a/1.6d
7: Boundary 1.6d/1.7c
8: Boundary 1.7c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000376745
3a
ENSE00001471548
chr11:
67169402-67169199
204
PP1A_HUMAN
1-19
19
2
A:7-19
B:7-19
13
13
1.4d
ENST00000376745
4d
ENSE00001212206
chr11:
67168670-67168539
132
PP1A_HUMAN
19-63
45
2
A:19-63
B:19-63
45
45
1.4f
ENST00000376745
4f
ENSE00001741927
chr11:
67168390-67168160
231
PP1A_HUMAN
63-140
78
2
A:63-140
B:63-140
78
78
1.5a
ENST00000376745
5a
ENSE00001186176
chr11:
67167136-67167032
105
PP1A_HUMAN
140-175
36
2
A:140-175
B:140-175
36
36
1.6a
ENST00000376745
6a
ENSE00001186169
chr11:
67166634-67166411
224
PP1A_HUMAN
175-249
75
2
A:175-249
B:175-249
75
75
1.6d
ENST00000376745
6d
ENSE00001707059
chr11:
67166327-67166193
135
PP1A_HUMAN
250-294
45
2
A:250-294
B:250-294
45
45
1.7c
ENST00000376745
7c
ENSE00002183271
chr11:
67166116-67165672
445
PP1A_HUMAN
295-330
36
2
A:295-300
B:295-300
6
6
[
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SCOP Domains
(0, 0)
Info
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_3eghA00 (A:7-300)
1b: CATH_3eghB00 (B:7-300)
2a: CATH_3eghC01 (C:475-583)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Human (Homo sapiens)
(36)
1a
3eghA00
A:7-300
1b
3eghB00
B:7-300
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
2a
3eghC01
C:475-583
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain F
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