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3EGG
Asym. Unit
Info
Asym.Unit (152 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COMPLEX BETWEEN PROTEIN PHOSPHATASE 1 ALPHA (PP1) AND THE PP1 BINDING AND PDZ DOMAINS OF SPINOPHILIN
Authors
:
M. J. Ragusa, R. Page, W. Peti
Date
:
10 Sep 08 (Deposition) - 23 Mar 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Pp1, Spinophilin, Serine/Threonine Phosphatase, Post Synaptic Density, Glutametergic Receptors, Carbohydrate Metabolism, Cell Cycle, Cell Division, Glycogen Metabolism, Hydrolase, Iron, Manganese, Metal-Binding, Phosphoprotein, Protein Phosphatase, Actin-Binding, Cell Junction, Cell Projection, Cytoskeleton, Developmental Protein, Differentiation, Neurogenesis, Nucleus, Synapse
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. J. Ragusa, B. Dancheck, D. A. Critton, A. C. Nairn, R. Page, W. Peti
Spinophilin Directs Protein Phosphatase 1 Specificity By Blocking Substrate Binding Sites.
Nat. Struct. Mol. Biol. V. 17 459 2010
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
2b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
2c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
MES
3
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3
MN
4
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:20
BINDING SITE FOR RESIDUE GOL A 331
02
AC2
SOFTWARE
PRO A:58 , LEU A:59 , LYS A:60 , SER A:85 , ASN A:86 , VAL A:285 , HOH A:533 , HOH C:636
BINDING SITE FOR RESIDUE GOL A 332
03
AC3
SOFTWARE
LYS A:41 , SER A:48 , GLN A:49 , PRO A:50 , GLU A:116 , HOH B:495
BINDING SITE FOR RESIDUE GOL A 333
04
AC4
SOFTWARE
ASP A:64 , HIS A:66 , ASP A:92 , MN A:402 , MES A:403 , HOH A:457 , HOH A:458
BINDING SITE FOR RESIDUE MN A 400
05
AC5
SOFTWARE
ASP A:92 , ASN A:124 , HIS A:173 , HIS A:248 , MN A:400 , MES A:403 , HOH A:457
BINDING SITE FOR RESIDUE MN A 402
06
AC6
SOFTWARE
HIS A:66 , ASP A:92 , ARG A:96 , ASN A:124 , HIS A:125 , TYR A:134 , TRP A:206 , ARG A:221 , HIS A:248 , TYR A:272 , MN A:400 , MN A:402 , HOH A:457 , HOH A:458
BINDING SITE FOR RESIDUE MES A 403
07
AC7
SOFTWARE
LEU B:17 , GLN B:20 , PHE B:81
BINDING SITE FOR RESIDUE GOL B 331
08
AC8
SOFTWARE
PRO B:58 , LEU B:59 , LYS B:60 , SER B:85 , ASN B:86 , VAL B:285 , HOH B:638 , HOH B:639
BINDING SITE FOR RESIDUE GOL B 332
09
AC9
SOFTWARE
ASP B:64 , HIS B:66 , ASP B:92 , MN B:403 , MES B:404 , HOH B:653 , HOH B:654
BINDING SITE FOR RESIDUE MN B 401
10
BC1
SOFTWARE
ASP B:92 , ASN B:124 , HIS B:173 , HIS B:248 , MN B:401 , MES B:404 , HOH B:653
BINDING SITE FOR RESIDUE MN B 403
11
BC2
SOFTWARE
HIS B:66 , ASP B:92 , ARG B:96 , ASN B:124 , HIS B:125 , TYR B:134 , ARG B:221 , HIS B:248 , MN B:401 , MN B:403 , HOH B:653 , HOH B:654
BINDING SITE FOR RESIDUE MES B 404
12
BC3
SOFTWARE
SER B:129 , VAL B:195 , TRP B:206
BINDING SITE FOR RESIDUE MES B 405
13
BC4
SOFTWARE
ASP B:253 , HOH B:597 , HOH B:601 , HOH B:602 , MET C:513 , GLY C:514 , GLY C:520 , HOH C:595
BINDING SITE FOR RESIDUE GOL C 1
14
BC5
SOFTWARE
HOH B:514 , HOH B:640 , HIS D:450
BINDING SITE FOR RESIDUE GOL D 1
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: SER_THR_PHOSPHATASE (A:121-126,B:121-126)
2: PDZ (C:496-583)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SER_THR_PHOSPHATASE
PS00125
Serine/threonine specific protein phosphatases signature.
PP1A_HUMAN
121-126
2
A:121-126
B:121-126
2
PDZ
PS50106
PDZ domain profile.
NEB2_RAT
496-584
1
C:496-583
[
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Exons
(7, 14)
Info
All Exons
Exon 1.3a (A:7-19 | B:7-19)
Exon 1.4d (A:19-63 | B:19-63)
Exon 1.4f (A:63-140 | B:63-140)
Exon 1.5a (A:140-175 | B:140-175)
Exon 1.6a (A:175-249 | B:175-249)
Exon 1.6d (A:250-294 | B:250-294)
Exon 1.7c (A:295-300 | B:295-300)
View:
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4d
3: Boundary 1.4d/1.4f
4: Boundary 1.4f/1.5a
5: Boundary 1.5a/1.6a
6: Boundary 1.6a/1.6d
7: Boundary 1.6d/1.7c
8: Boundary 1.7c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000376745
3a
ENSE00001471548
chr11:
67169402-67169199
204
PP1A_HUMAN
1-19
19
2
A:7-19
B:7-19
13
13
1.4d
ENST00000376745
4d
ENSE00001212206
chr11:
67168670-67168539
132
PP1A_HUMAN
19-63
45
2
A:19-63
B:19-63
45
45
1.4f
ENST00000376745
4f
ENSE00001741927
chr11:
67168390-67168160
231
PP1A_HUMAN
63-140
78
2
A:63-140
B:63-140
78
78
1.5a
ENST00000376745
5a
ENSE00001186176
chr11:
67167136-67167032
105
PP1A_HUMAN
140-175
36
2
A:140-175
B:140-175
36
36
1.6a
ENST00000376745
6a
ENSE00001186169
chr11:
67166634-67166411
224
PP1A_HUMAN
175-249
75
2
A:175-249
B:175-249
75
75
1.6d
ENST00000376745
6d
ENSE00001707059
chr11:
67166327-67166193
135
PP1A_HUMAN
250-294
45
2
A:250-294
B:250-294
45
45
1.7c
ENST00000376745
7c
ENSE00002183271
chr11:
67166116-67165672
445
PP1A_HUMAN
295-330
36
2
A:295-300
B:295-300
6
6
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3egga_ (A:)
1b: SCOP_d3eggb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Protein serine/threonine phosphatase
(50)
Protein domain
:
Protein phosphatase-1 (PP-1)
(15)
Human (Homo sapiens), gamma isoform [TaxId: 9606]
(2)
1a
d3egga_
A:
1b
d3eggb_
B:
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_3eggA00 (A:7-300)
1b: CATH_3eggB00 (B:7-300)
2a: CATH_3eggC01 (C:475-583)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Human (Homo sapiens)
(36)
1a
3eggA00
A:7-300
1b
3eggB00
B:7-300
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
2a
3eggC01
C:475-583
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Chain D
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