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3EFP
Biol. Unit 2
Info
Asym.Unit (89 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (41 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI TWIN ARGININE LEADER PEPTIDE BINDING PROTEIN DMSD IN A MONOMERIC FORM
Authors
:
C. M. Stevens, M. Paetzel
Date
:
09 Sep 08 (Deposition) - 07 Apr 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Twin-Arginine Translocation (Tat), Protein Targeting, Protein Translocation, Chaperone, Leader Peptide, Signal Peptide, Redox Enzyme Maturation Protein (Remp)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
C. M. Stevens, T. M. Winstone, R. J. Turner, M. Paetzel
Structural Analysis Of A Monomeric Form Of The Twin-Arginin Leader Peptide Binding Chaperone Escherichia Coli Dmsd.
J. Mol. Biol. V. 389 124 2009
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: SODIUM ION (NAa)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
4c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
4d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
4
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:87 , ASN A:122 , GLU A:123 , TRS A:207 , GLU B:140 , HOH B:718 , HOH B:769
BINDING SITE FOR RESIDUE TRS A 205
02
AC5
SOFTWARE
PRO A:85 , HOH A:698 , HOH A:848 , HOH A:861 , HOH B:805
BINDING SITE FOR RESIDUE GOL A 209
03
AC9
SOFTWARE
PRO A:201 , LEU A:202 , HOH A:792 , GLN B:7 , ASP B:8 , GLN B:188 , GLN B:192 , HOH B:817
BINDING SITE FOR RESIDUE GOL B 205
04
BC1
SOFTWARE
TRP B:153 , HOH B:793 , HOH B:851
BINDING SITE FOR RESIDUE TRS B 206
05
BC2
SOFTWARE
GLN B:6 , GLN B:7 , ASP B:8 , HOH B:841 , HOH B:872
BINDING SITE FOR RESIDUE TRS B 207
06
BC3
SOFTWARE
ALA B:31 , VAL B:34 , ALA B:35 , THR B:38 , HIS B:68 , HOH B:856 , HOH B:864
BINDING SITE FOR RESIDUE GOL B 208
07
BC4
SOFTWARE
ARG B:143 , HOH B:683 , HOH B:720
BINDING SITE FOR RESIDUE CL B 209
08
BC5
SOFTWARE
HOH A:869 , HOH B:735
BINDING SITE FOR RESIDUE CL B 210
09
BC6
SOFTWARE
GLN B:6 , ALA B:139 , HOH B:801 , HOH B:802 , HOH B:829
BINDING SITE FOR RESIDUE CL B 211
10
BC7
SOFTWARE
GLN B:144 , THR B:145 , GLU B:146
BINDING SITE FOR RESIDUE NA B 212
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3efpa_ (A:)
1b: SCOP_d3efpb_ (B:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
TorD-like
(10)
Superfamily
:
TorD-like
(10)
Family
:
TorD-like
(10)
Protein domain
:
automated matches
(6)
Escherichia coli K-12 [TaxId: 83333]
(3)
1a
d3efpa_
A:
1b
d3efpb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3efpA00 (A:1-204)
1b: CATH_3efpB00 (B:-3-204)
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Classes
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
TorD-like
(4)
Homologous Superfamily
:
TorD-like
(4)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(1)
1a
3efpA00
A:1-204
1b
3efpB00
B:-3-204
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Pfam Domains
(0, 0)
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Chain B
Asymmetric Unit 1
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Asym.Unit (89 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
Biol.Unit 2 (41 KB)
Header - Biol.Unit 2
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