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3EE2
Asym. Unit
Info
Asym.Unit (78 KB)
Biol.Unit 1 (72 KB)
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(1)
Title
:
STRUCTURE OF HUMAN PROSTAGLANDIN D-SYNTHASE (HGSTS1-1) IN COMPLEX WITH NOCODAZOLE
Authors
:
A. J. Oakley
Date
:
04 Sep 08 (Deposition) - 16 Sep 08 (Release) - 14 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.91
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
H-Pgds, Prostanoid Production, Inflamation, Nocodazole, Glutathione Transferase Sigma, Fatty Acid Biosynthesis, Isomerase, Lipid Synthesis, Prostaglandin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. E. Weber, A. J. Oakley, A. N. Christ, A. G. Clark, J. D. Hayes, R. Hall, D. A. Hume, P. G. Board, M. L. Smythe, J. U. Flanagan
Identification And Characterisation Of New Inhibitors For The Human Hematopoietic Prostaglandin D(2) Synthase
Eur. J. Med. Chem. V. 45 447 2010
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
2a: MAGNESIUM ION (MGa)
3a: NOCODAZOLE (NZOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GSH
1
Ligand/Ion
GLUTATHIONE
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
NZO
1
Ligand/Ion
NOCODAZOLE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:8 , ARG A:14 , TRP A:39 , LYS A:43 , LYS A:50 , ILE A:51 , PRO A:52 , GLN A:63 , SER A:64 , NZO A:201 , HOH A:209 , ASP B:97 , GLN B:196
BINDING SITE FOR RESIDUE GSH A 200
2
AC2
SOFTWARE
ARG A:14 , ASP A:96 , MET A:99 , TRP A:104 , TYR A:152 , THR A:159 , LEU A:199 , GSH A:200 , HOH A:295
BINDING SITE FOR RESIDUE NZO A 201
3
AC3
SOFTWARE
ASP B:96 , HOH B:301 , HOH B:302 , HOH B:303 , HOH B:369 , HOH B:370 , HOH B:371
BINDING SITE FOR RESIDUE MG B 300
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (A:2-79,B:2-79)
2: GST_CTER (A:81-199,B:81-199)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
HPGDS_HUMAN
2-79
2
A:2-79
B:2-79
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
HPGDS_HUMAN
81-199
2
A:81-199
B:81-199
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Exons
(5, 10)
Info
All Exons
Exon 1.2a (A:2-45 | B:2-45)
Exon 1.3 (A:45-76 | B:45-76)
Exon 1.4 (A:76-112 | B:76-112)
Exon 1.6 (A:113-145 | B:113-145)
Exon 1.7 (A:146-199 | B:146-199)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000295256
1a
ENSE00001428701
chr4:
95264027-95263946
82
HPGDS_HUMAN
-
0
0
-
-
1.2a
ENST00000295256
2a
ENSE00002147371
chr4:
95255789-95255648
142
HPGDS_HUMAN
1-45
45
2
A:2-45
B:2-45
44
44
1.3
ENST00000295256
3
ENSE00001238639
chr4:
95239116-95239024
93
HPGDS_HUMAN
45-76
32
2
A:45-76
B:45-76
32
32
1.4
ENST00000295256
4
ENSE00001071670
chr4:
95229894-95229785
110
HPGDS_HUMAN
76-112
37
2
A:76-112
B:76-112
37
37
1.6
ENST00000295256
6
ENSE00001071668
chr4:
95223395-95223297
99
HPGDS_HUMAN
113-145
33
2
A:113-145
B:113-145
33
33
1.7
ENST00000295256
7
ENSE00001302624
chr4:
95220795-95219686
1110
HPGDS_HUMAN
146-199
54
2
A:146-199
B:146-199
54
54
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3ee2a1 (A:76-199)
1b: SCOP_d3ee2b1 (B:76-199)
2a: SCOP_d3ee2a2 (A:2-75)
2b: SCOP_d3ee2b2 (B:2-75)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class sigma GST
(12)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d3ee2a1
A:76-199
1b
d3ee2b1
B:76-199
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class sigma GST
(12)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d3ee2a2
A:2-75
2b
d3ee2b2
B:2-75
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3ee2A01 (A:2-75,A:184-199)
1b: CATH_3ee2B01 (B:2-75,B:184-199)
2a: CATH_3ee2A02 (A:76-183)
2b: CATH_3ee2B02 (B:76-183)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
3ee2A01
A:2-75,A:184-199
1b
3ee2B01
B:2-75,B:184-199
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
3ee2A02
A:76-183
2b
3ee2B02
B:76-183
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (78 KB)
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