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3EDX
Biol. Unit 1
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Asym.Unit (162 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (54 KB)
Biol.Unit 3 (54 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE W215A/E217A MUTANT OF MURINE THROMBIN
Authors
:
P. S. Gandhi, M. J. Page, Z. Chen, L. Bush-Pelc, E. Di Cera
Date
:
03 Sep 08 (Deposition) - 07 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Serine Protease, Acute Phase, Blood Coagulation, Cleavage On Pair Of Basic Residues, Gamma-Carboxyglutamic Acid, Glycoprotein, Hydrolase, Kringle, Protease, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. S. Gandhi, M. J. Page, Z. Chen, L. Bush-Pelc, E. Di Cera
Molecular Basis For The Kinetic Differences Of The W215A/E217A Mutant Of Human And Murine Thrombin
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:125 , LYS B:126 , LYS B:235
BINDING SITE FOR RESIDUE SO4 B 303
2
AC2
SOFTWARE
LEU B:130 , ARG B:165 , PHE B:181 , HOH B:422
BINDING SITE FOR RESIDUE SO4 B 307
3
AC3
SOFTWARE
ASN B:60G
BINDING SITE FOR RESIDUE NAG B 401
4
AC4
SOFTWARE
LYS A:1I , ARG D:50 , GLU D:86 , LYS D:107
BINDING SITE FOR RESIDUE SO4 D 302
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (B:16-243)
2: TRYPSIN_HIS (B:53-58)
3: TRYPSIN_SER (B:189-200)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
THRB_MOUSE
361-615
1
B:16-243
-
-
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
THRB_MOUSE
399-404
1
B:53-58
-
-
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
THRB_MOUSE
559-570
1
B:189-200
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
(2, 9)
Info
all CATH domains
1a: CATH_3edxA00 (A:1P-14L)
1b: CATH_3edxC00 (C:1P-14L)
1c: CATH_3edxE00 (E:1P-14L)
2a: CATH_3edxB02 (B:28-120,B:233-245)
2b: CATH_3edxB01 (B:16-27,B:121-232)
2c: CATH_3edxD01 (D:16-27,D:121-232)
2d: CATH_3edxF01 (F:16-27,F:121-232)
2e: CATH_3edxD02 (D:28-120,D:233-245)
2f: CATH_3edxF02 (F:28-120,F:233-245)
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Classes
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(
)
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(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Epsilon-Thrombin; Chain L
(37)
Homologous Superfamily
:
Epsilon-Thrombin, subunit L
(37)
Mouse (Mus musculus)
(3)
1a
3edxA00
A:1P-14L
1b
3edxC00
C:1P-14L
1c
3edxE00
E:1P-14L
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Mouse (Mus musculus)
(6)
2a
3edxB02
B:28-120,B:233-245
2b
3edxB01
B:16-27,B:121-232
2c
3edxD01
D:16-27,D:121-232
2d
3edxF01
F:16-27,F:121-232
2e
3edxD02
D:28-120,D:233-245
2f
3edxF02
F:28-120,F:233-245
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (162 KB)
Header - Asym.Unit
Biol.Unit 1 (55 KB)
Header - Biol.Unit 1
Biol.Unit 2 (54 KB)
Header - Biol.Unit 2
Biol.Unit 3 (54 KB)
Header - Biol.Unit 3
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