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3ED8
Asym. Unit
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Asym.Unit (189 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (40 KB)
Biol.Unit 3 (40 KB)
Biol.Unit 4 (39 KB)
Biol.Unit 5 (36 KB)
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(1)
Title
:
APPLICATION OF THE SUPERFOLDER YFP BIMOLECULAR FLUORESCENCE COMPLEMENTATION FOR STUDYING PROTEIN-PROTEIN INTERACTIONS IN VITRO
Authors
:
C. Ottmann, M. Weyand
Date
:
02 Sep 08 (Deposition) - 20 Jan 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Keywords
:
Superfolder, Bimolecular Fluorescence Complementation, Luminescent Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Ottmann, M. Weyand, A. Wolf, J. Kuhlmann, C. Ottmann
Applicability Of Superfolder Yfp Bimolecular Fluorescence Complementation In Vitro.
Biol. Chem. V. 390 81 2009
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPY... (CROa)
1b: {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPY... (CROb)
1c: {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPY... (CROc)
1d: {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPY... (CROd)
1e: {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPY... (CROe)
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No.
Name
Count
Type
Full Name
1
CRO
5
Mod. Amino Acid
{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(4, 20)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_GFP_AEQVI_001 (F100Y, chain A/B/C/D/E, )
2: VAR_GFP_AEQVI_002 (T108S, chain A/B/C/D/E, )
3: VAR_GFP_AEQVI_003 (L141M, chain A/B/C/D/E, )
4: VAR_GFP_AEQVI_004 (V243I, chain A/B/C/D/E, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_GFP_AEQVI_001
*
F
100
Y
GFP_AEQVI
---
---
A/B/C/D/E
F
100
Y
2
UniProt
VAR_GFP_AEQVI_002
*
T
108
S
GFP_AEQVI
---
---
A/B/C/D/E
T
108
S
3
UniProt
VAR_GFP_AEQVI_003
*
L
141
M
GFP_AEQVI
---
---
A/B/C/D/E
L
141
M
4
UniProt
VAR_GFP_AEQVI_004
*
V
219
I
GFP_AEQVI
---
---
A/B/C/D/E
V
243
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d3ed8a_ (A:)
1b: SCOP_d3ed8b_ (B:)
1c: SCOP_d3ed8c_ (C:)
1d: SCOP_d3ed8d_ (D:)
1e: SCOP_d3ed8e_ (E:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
Fluorescent proteins
(271)
Protein domain
:
automated matches
(102)
Jellyfish (Aequorea victoria) [TaxId: 6100]
(34)
1a
d3ed8a_
A:
1b
d3ed8b_
B:
1c
d3ed8c_
C:
1d
d3ed8d_
D:
1e
d3ed8e_
E:
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CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_3ed8E00 (E:3-255)
1b: CATH_3ed8B00 (B:2-255)
1c: CATH_3ed8A00 (A:2-254)
1d: CATH_3ed8D00 (D:2-255)
1e: CATH_3ed8C00 (C:2-255)
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Organisms
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)
(
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Green Fluorescent Protein
(102)
Homologous Superfamily
:
Green Fluorescent Protein
(102)
Aequorea victoria. Organism_taxid: 6100.
(34)
1a
3ed8E00
E:3-255
1b
3ed8B00
B:2-255
1c
3ed8A00
A:2-254
1d
3ed8D00
D:2-255
1e
3ed8C00
C:2-255
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Pfam Domains
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Asym.Unit (189 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
Biol.Unit 2 (40 KB)
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Biol.Unit 3 (40 KB)
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Biol.Unit 4 (39 KB)
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Biol.Unit 5 (36 KB)
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