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3ECD
Biol. Unit 1
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Asym.Unit (269 KB)
Biol.Unit 1 (133 KB)
Biol.Unit 2 (135 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SERINE HYDROXYMETHYLTRANSFERASE FROM BURKHOLDERIA PSEUDOMALLEI
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
29 Aug 08 (Deposition) - 09 Sep 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Ssgcid, Decode, Bupsa00008A, One-Carbon Metabolism, Pyridoxal Phosphate, Transferase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease
(Keyword Search:
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Reference
:
Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Crystal Structure Of Serine Hydroxymethyltransferase From Burkholderia Pseudomallei
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
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No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:237 , ASP A:286 , TYR A:290 , THR A:374 , HOH A:677 , HOH A:682 , ASN D:5 , PHE D:7
BINDING SITE FOR RESIDUE GOL A 425
2
AC4
SOFTWARE
ASN A:5 , PHE A:7 , ARG D:237 , ASP D:286 , TYR D:290 , THR D:374 , HOH D:513 , HOH D:543 , HOH D:654
BINDING SITE FOR RESIDUE GOL D 425
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SHMT (A:226-242,D:226-242)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SHMT
PS00096
Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.
GLYA2_BURP1
226-242
2
A:226-242
-
-
D:226-242
GLYA2_BURPS
226-242
2
A:226-242
-
-
D:226-242
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ecda_ (A:)
1b: SCOP_d3ecdb_ (B:)
1c: SCOP_d3ecdc_ (C:)
1d: SCOP_d3ecdd_ (D:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
automated matches
(163)
Protein domain
:
automated matches
(163)
Burkholderia pseudomallei [TaxId: 28450]
(3)
1a
d3ecda_
A:
1b
d3ecdb_
B:
1c
d3ecdc_
C:
1d
d3ecdd_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3ecdB01 (B:44-283)
1b: CATH_3ecdA01 (A:44-283)
1c: CATH_3ecdC01 (C:44-283)
1d: CATH_3ecdD01 (D:44-283)
2a: CATH_3ecdA02 (A:284-424)
2b: CATH_3ecdB02 (B:284-424)
2c: CATH_3ecdC02 (C:284-424)
2d: CATH_3ecdD02 (D:284-424)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Pseudomonas pseudomallei (Burkholderia pseudomallei)
(1)
1a
3ecdB01
B:44-283
1b
3ecdA01
A:44-283
1c
3ecdC01
C:44-283
1d
3ecdD01
D:44-283
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Pseudomonas pseudomallei (Burkholderia pseudomallei)
(1)
2a
3ecdA02
A:284-424
2b
3ecdB02
B:284-424
2c
3ecdC02
C:284-424
2d
3ecdD02
D:284-424
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (269 KB)
Header - Asym.Unit
Biol.Unit 1 (133 KB)
Header - Biol.Unit 1
Biol.Unit 2 (135 KB)
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