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3EC7
Biol. Unit 3
Info
Asym.Unit (492 KB)
Biol.Unit 1 (242 KB)
Biol.Unit 2 (127 KB)
Biol.Unit 3 (125 KB)
Biol.Unit 4 (242 KB)
Biol.Unit 5 (126 KB)
Biol.Unit 6 (125 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE DEHYDROGENASE FROM SALMONELLA TYPHIMURIUM LT2
Authors
:
Y. Kim, E. Evdokimova, M. Kudritska, A. Savchenko, A. Edwards, A. Joach Midwest Center For Structural Genomics (Mcsg)
Date
:
29 Aug 08 (Deposition) - 23 Sep 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F,G,H (1x)
Biol. Unit 5: E,F (1x)
Biol. Unit 6: G,H (1x)
Keywords
:
Alpha-Beta, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, E. Evdokimova, M. Kudritska, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of Putative Dehydrogenase From Salmonella Typhimurium Lt2
To Be Published
[
close entry info
]
Hetero Components
(4, 20)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
3c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
3d: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEd)
3e: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEe)
3f: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEf)
3g: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEg)
3h: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEh)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
5a: SELENOMETHIONINE (MSEa)
5aa: SELENOMETHIONINE (MSEaa)
5ab: SELENOMETHIONINE (MSEab)
5ac: SELENOMETHIONINE (MSEac)
5ad: SELENOMETHIONINE (MSEad)
5ae: SELENOMETHIONINE (MSEae)
5af: SELENOMETHIONINE (MSEaf)
5ag: SELENOMETHIONINE (MSEag)
5ah: SELENOMETHIONINE (MSEah)
5ai: SELENOMETHIONINE (MSEai)
5aj: SELENOMETHIONINE (MSEaj)
5ak: SELENOMETHIONINE (MSEak)
5al: SELENOMETHIONINE (MSEal)
5am: SELENOMETHIONINE (MSEam)
5an: SELENOMETHIONINE (MSEan)
5ao: SELENOMETHIONINE (MSEao)
5ap: SELENOMETHIONINE (MSEap)
5aq: SELENOMETHIONINE (MSEaq)
5ar: SELENOMETHIONINE (MSEar)
5as: SELENOMETHIONINE (MSEas)
5at: SELENOMETHIONINE (MSEat)
5au: SELENOMETHIONINE (MSEau)
5av: SELENOMETHIONINE (MSEav)
5aw: SELENOMETHIONINE (MSEaw)
5ax: SELENOMETHIONINE (MSEax)
5ay: SELENOMETHIONINE (MSEay)
5az: SELENOMETHIONINE (MSEaz)
5b: SELENOMETHIONINE (MSEb)
5ba: SELENOMETHIONINE (MSEba)
5bb: SELENOMETHIONINE (MSEbb)
5bc: SELENOMETHIONINE (MSEbc)
5bd: SELENOMETHIONINE (MSEbd)
5be: SELENOMETHIONINE (MSEbe)
5bf: SELENOMETHIONINE (MSEbf)
5bg: SELENOMETHIONINE (MSEbg)
5bh: SELENOMETHIONINE (MSEbh)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
5k: SELENOMETHIONINE (MSEk)
5l: SELENOMETHIONINE (MSEl)
5m: SELENOMETHIONINE (MSEm)
5n: SELENOMETHIONINE (MSEn)
5o: SELENOMETHIONINE (MSEo)
5p: SELENOMETHIONINE (MSEp)
5q: SELENOMETHIONINE (MSEq)
5r: SELENOMETHIONINE (MSEr)
5s: SELENOMETHIONINE (MSEs)
5t: SELENOMETHIONINE (MSEt)
5u: SELENOMETHIONINE (MSEu)
5v: SELENOMETHIONINE (MSEv)
5w: SELENOMETHIONINE (MSEw)
5x: SELENOMETHIONINE (MSEx)
5y: SELENOMETHIONINE (MSEy)
5z: SELENOMETHIONINE (MSEz)
6a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
6b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
6c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
6d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
6e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
6f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
6g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
6h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
-1
Ligand/Ion
ACETIC ACID
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
K
-1
Ligand/Ion
POTASSIUM ION
5
MSE
15
Mod. Amino Acid
SELENOMETHIONINE
6
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
6: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
GLN A:231 , VAL A:269 , HOH A:675 , ALA C:260
BINDING SITE FOR RESIDUE ACY A 403
2
AC7
SOFTWARE
GLY C:9 , GLY C:11 , MSE C:12 , ILE C:13 , ASP C:35 , ILE C:36 , VAL C:37 , ARG C:40 , THR C:73 , ALA C:74 , SER C:75 , ASN C:76 , ALA C:78 , HIS C:79 , GLU C:96 , LYS C:97 , PRO C:98 , GLY C:124 , MSE C:126 , TYR C:279 , HOH C:471 , HOH C:602 , HOH C:614 , HOH C:618
BINDING SITE FOR RESIDUE NAD C 400
3
AC8
SOFTWARE
HIS C:155 , ASN C:157 , THR C:160 , VAL C:161 , TYR C:164 , GLU C:172 , THR C:173 , HIS C:176 , TYR C:234 , TRP C:271 , HOH C:449 , HOH C:531
BINDING SITE FOR RESIDUE EPE C 401
4
AC9
SOFTWARE
VAL D:8 , GLY D:9 , GLY D:11 , MSE D:12 , ILE D:13 , ASP D:35 , ILE D:36 , VAL D:37 , ARG D:40 , THR D:73 , ALA D:74 , SER D:75 , ASN D:76 , HIS D:79 , GLU D:96 , LYS D:97 , PRO D:98 , GLY D:124 , MSE D:126 , TRP D:271 , TYR D:279 , HOH D:435 , HOH D:469 , HOH D:617 , HOH D:621 , HOH D:644
BINDING SITE FOR RESIDUE NAD D 400
5
BC1
SOFTWARE
HIS D:155 , THR D:160 , VAL D:161 , GLU D:172 , THR D:173 , HIS D:176 , TYR D:234 , TRP D:271 , HOH D:543 , HOH D:544
BINDING SITE FOR RESIDUE EPE D 401
6
BC2
SOFTWARE
GLN A:135 , LYS B:262 , ALA D:255 , VAL D:257 , SER D:264 , THR D:265 , ASP D:266 , HOH D:647
BINDING SITE FOR RESIDUE EDO D 402
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_3ec7A02 (A:144-265)
1b: CATH_3ec7B02 (B:144-265)
1c: CATH_3ec7C02 (C:144-265)
1d: CATH_3ec7D02 (D:144-265)
1e: CATH_3ec7E02 (E:144-265)
1f: CATH_3ec7F02 (F:144-265)
1g: CATH_3ec7G02 (G:144-265)
1h: CATH_3ec7H02 (H:144-265)
2a: CATH_3ec7A01 (A:2-143,A:266-336)
2b: CATH_3ec7B01 (B:2-143,B:266-336)
2c: CATH_3ec7C01 (C:2-143,C:266-336)
2d: CATH_3ec7D01 (D:2-143,D:266-336)
2e: CATH_3ec7E01 (E:2-143,E:266-336)
2f: CATH_3ec7F01 (F:2-143,F:266-336)
2g: CATH_3ec7G01 (G:2-143,G:266-336)
2h: CATH_3ec7H01 (H:2-143,H:266-336)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Salmonella typhimurium lt2. Organism_taxid: 99287. Strain: lt2.
(1)
1a
3ec7A02
A:144-265
1b
3ec7B02
B:144-265
1c
3ec7C02
C:144-265
1d
3ec7D02
D:144-265
1e
3ec7E02
E:144-265
1f
3ec7F02
F:144-265
1g
3ec7G02
G:144-265
1h
3ec7H02
H:144-265
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Salmonella typhimurium lt2. Organism_taxid: 99287. Strain: lt2.
(2)
2a
3ec7A01
A:2-143,A:266-336
2b
3ec7B01
B:2-143,B:266-336
2c
3ec7C01
C:2-143,C:266-336
2d
3ec7D01
D:2-143,D:266-336
2e
3ec7E01
E:2-143,E:266-336
2f
3ec7F01
F:2-143,F:266-336
2g
3ec7G01
G:2-143,G:266-336
2h
3ec7H01
H:2-143,H:266-336
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (492 KB)
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