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3EC7
Asym. Unit
Info
Asym.Unit (492 KB)
Biol.Unit 1 (242 KB)
Biol.Unit 2 (127 KB)
Biol.Unit 3 (125 KB)
Biol.Unit 4 (242 KB)
Biol.Unit 5 (126 KB)
Biol.Unit 6 (125 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE DEHYDROGENASE FROM SALMONELLA TYPHIMURIUM LT2
Authors
:
Y. Kim, E. Evdokimova, M. Kudritska, A. Savchenko, A. Edwards, A. Joach Midwest Center For Structural Genomics (Mcsg)
Date
:
29 Aug 08 (Deposition) - 23 Sep 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F,G,H (1x)
Biol. Unit 5: E,F (1x)
Biol. Unit 6: G,H (1x)
Keywords
:
Alpha-Beta, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, E. Evdokimova, M. Kudritska, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of Putative Dehydrogenase From Salmonella Typhimurium Lt2
To Be Published
[
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Hetero Components
(6, 85)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
3c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
3d: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEd)
3e: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEe)
3f: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEf)
3g: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEg)
3h: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEh)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
5a: SELENOMETHIONINE (MSEa)
5aa: SELENOMETHIONINE (MSEaa)
5ab: SELENOMETHIONINE (MSEab)
5ac: SELENOMETHIONINE (MSEac)
5ad: SELENOMETHIONINE (MSEad)
5ae: SELENOMETHIONINE (MSEae)
5af: SELENOMETHIONINE (MSEaf)
5ag: SELENOMETHIONINE (MSEag)
5ah: SELENOMETHIONINE (MSEah)
5ai: SELENOMETHIONINE (MSEai)
5aj: SELENOMETHIONINE (MSEaj)
5ak: SELENOMETHIONINE (MSEak)
5al: SELENOMETHIONINE (MSEal)
5am: SELENOMETHIONINE (MSEam)
5an: SELENOMETHIONINE (MSEan)
5ao: SELENOMETHIONINE (MSEao)
5ap: SELENOMETHIONINE (MSEap)
5aq: SELENOMETHIONINE (MSEaq)
5ar: SELENOMETHIONINE (MSEar)
5as: SELENOMETHIONINE (MSEas)
5at: SELENOMETHIONINE (MSEat)
5au: SELENOMETHIONINE (MSEau)
5av: SELENOMETHIONINE (MSEav)
5aw: SELENOMETHIONINE (MSEaw)
5ax: SELENOMETHIONINE (MSEax)
5ay: SELENOMETHIONINE (MSEay)
5az: SELENOMETHIONINE (MSEaz)
5b: SELENOMETHIONINE (MSEb)
5ba: SELENOMETHIONINE (MSEba)
5bb: SELENOMETHIONINE (MSEbb)
5bc: SELENOMETHIONINE (MSEbc)
5bd: SELENOMETHIONINE (MSEbd)
5be: SELENOMETHIONINE (MSEbe)
5bf: SELENOMETHIONINE (MSEbf)
5bg: SELENOMETHIONINE (MSEbg)
5bh: SELENOMETHIONINE (MSEbh)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
5k: SELENOMETHIONINE (MSEk)
5l: SELENOMETHIONINE (MSEl)
5m: SELENOMETHIONINE (MSEm)
5n: SELENOMETHIONINE (MSEn)
5o: SELENOMETHIONINE (MSEo)
5p: SELENOMETHIONINE (MSEp)
5q: SELENOMETHIONINE (MSEq)
5r: SELENOMETHIONINE (MSEr)
5s: SELENOMETHIONINE (MSEs)
5t: SELENOMETHIONINE (MSEt)
5u: SELENOMETHIONINE (MSEu)
5v: SELENOMETHIONINE (MSEv)
5w: SELENOMETHIONINE (MSEw)
5x: SELENOMETHIONINE (MSEx)
5y: SELENOMETHIONINE (MSEy)
5z: SELENOMETHIONINE (MSEz)
6a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
6b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
6c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
6d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
6e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
6f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
6g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
6h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
2
Ligand/Ion
ACETIC ACID
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
EPE
8
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
K
2
Ligand/Ion
POTASSIUM ION
5
MSE
60
Mod. Amino Acid
SELENOMETHIONINE
6
NAD
8
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:8 , GLY A:9 , GLY A:11 , MSE A:12 , ILE A:13 , ASP A:35 , ILE A:36 , ARG A:40 , THR A:73 , ALA A:74 , SER A:75 , ASN A:76 , HIS A:79 , GLU A:96 , LYS A:97 , GLY A:124 , MSE A:126 , TRP A:271 , TYR A:279 , HOH A:421 , HOH A:566 , HOH A:587 , HOH A:652 , HOH A:693 , HOH A:694
BINDING SITE FOR RESIDUE NAD A 400
02
AC2
SOFTWARE
HIS A:155 , THR A:160 , VAL A:161 , GLU A:172 , THR A:173 , HIS A:176 , TYR A:234 , TRP A:271 , HOH A:451 , HOH A:571 , HOH A:696
BINDING SITE FOR RESIDUE EPE A 401
03
AC3
SOFTWARE
ASP A:312 , VAL A:315 , LYS A:316 , GLU A:319 , HOH A:609
BINDING SITE FOR RESIDUE ACY A 402
04
AC4
SOFTWARE
GLN A:231 , VAL A:269 , HOH A:675 , ALA C:260
BINDING SITE FOR RESIDUE ACY A 403
05
AC5
SOFTWARE
GLY B:9 , GLY B:11 , MSE B:12 , ILE B:13 , CYS B:34 , ASP B:35 , ILE B:36 , VAL B:37 , ARG B:40 , THR B:73 , ALA B:74 , SER B:75 , ASN B:76 , HIS B:79 , GLU B:96 , LYS B:97 , PRO B:98 , GLY B:124 , MSE B:126 , TYR B:279 , HOH B:485 , HOH B:516 , HOH B:646 , HOH B:657
BINDING SITE FOR RESIDUE NAD B 400
06
AC6
SOFTWARE
HIS B:155 , ASN B:157 , THR B:160 , VAL B:161 , GLU B:172 , THR B:173 , HIS B:176 , TYR B:234 , TRP B:271
BINDING SITE FOR RESIDUE EPE B 401
07
AC7
SOFTWARE
GLY C:9 , GLY C:11 , MSE C:12 , ILE C:13 , ASP C:35 , ILE C:36 , VAL C:37 , ARG C:40 , THR C:73 , ALA C:74 , SER C:75 , ASN C:76 , ALA C:78 , HIS C:79 , GLU C:96 , LYS C:97 , PRO C:98 , GLY C:124 , MSE C:126 , TYR C:279 , HOH C:471 , HOH C:602 , HOH C:614 , HOH C:618
BINDING SITE FOR RESIDUE NAD C 400
08
AC8
SOFTWARE
HIS C:155 , ASN C:157 , THR C:160 , VAL C:161 , TYR C:164 , GLU C:172 , THR C:173 , HIS C:176 , TYR C:234 , TRP C:271 , HOH C:449 , HOH C:531
BINDING SITE FOR RESIDUE EPE C 401
09
AC9
SOFTWARE
VAL D:8 , GLY D:9 , GLY D:11 , MSE D:12 , ILE D:13 , ASP D:35 , ILE D:36 , VAL D:37 , ARG D:40 , THR D:73 , ALA D:74 , SER D:75 , ASN D:76 , HIS D:79 , GLU D:96 , LYS D:97 , PRO D:98 , GLY D:124 , MSE D:126 , TRP D:271 , TYR D:279 , HOH D:435 , HOH D:469 , HOH D:617 , HOH D:621 , HOH D:644
BINDING SITE FOR RESIDUE NAD D 400
10
BC1
SOFTWARE
HIS D:155 , THR D:160 , VAL D:161 , GLU D:172 , THR D:173 , HIS D:176 , TYR D:234 , TRP D:271 , HOH D:543 , HOH D:544
BINDING SITE FOR RESIDUE EPE D 401
11
BC2
SOFTWARE
GLN A:135 , LYS B:262 , ALA D:255 , VAL D:257 , SER D:264 , THR D:265 , ASP D:266 , HOH D:647
BINDING SITE FOR RESIDUE EDO D 402
12
BC3
SOFTWARE
VAL E:8 , GLY E:9 , GLY E:11 , MSE E:12 , ILE E:13 , ASP E:35 , ILE E:36 , ARG E:40 , THR E:73 , ALA E:74 , SER E:75 , ASN E:76 , HIS E:79 , GLU E:96 , LYS E:97 , PRO E:98 , GLY E:124 , MSE E:126 , TYR E:279 , HOH E:533 , HOH E:638 , HOH E:705 , HOH E:727 , HOH E:753
BINDING SITE FOR RESIDUE NAD E 400
13
BC4
SOFTWARE
HIS E:155 , THR E:160 , VAL E:161 , TYR E:164 , GLU E:172 , THR E:173 , HIS E:176 , TYR E:234 , TRP E:271 , HOH E:648 , HOH E:683 , HOH E:753
BINDING SITE FOR RESIDUE EPE E 401
14
BC5
SOFTWARE
ALA E:255 , VAL E:257 , SER E:264 , THR E:265 , ASP E:266 , HOH E:793 , LYS G:262
BINDING SITE FOR RESIDUE EDO E 402
15
BC6
SOFTWARE
TYR E:171 , ASP E:312 , LYS E:316 , GLU E:319 , HOH E:698
BINDING SITE FOR RESIDUE EDO E 403
16
BC7
SOFTWARE
GLY F:9 , GLY F:11 , MSE F:12 , ILE F:13 , CYS F:34 , ASP F:35 , ILE F:36 , VAL F:37 , ARG F:40 , TYR F:58 , THR F:73 , ALA F:74 , SER F:75 , ASN F:76 , ALA F:78 , HIS F:79 , GLU F:96 , LYS F:97 , PRO F:98 , GLY F:124 , MSE F:126 , TYR F:279 , HOH F:444 , HOH F:490 , HOH F:522 , HOH F:568
BINDING SITE FOR RESIDUE NAD F 400
17
BC8
SOFTWARE
HIS F:155 , THR F:160 , VAL F:161 , GLU F:172 , THR F:173 , HIS F:176 , TYR F:234 , TRP F:271 , HOH F:568 , HOH F:626
BINDING SITE FOR RESIDUE EPE F 401
18
BC9
SOFTWARE
GLY G:9 , GLY G:11 , MSE G:12 , ILE G:13 , ASP G:35 , ILE G:36 , VAL G:37 , ARG G:40 , THR G:73 , ALA G:74 , SER G:75 , ASN G:76 , HIS G:79 , GLU G:96 , LYS G:97 , PRO G:98 , GLY G:124 , MSE G:126 , TYR G:279 , HOH G:635 , HOH G:726 , HOH G:753 , HOH G:773 , HOH G:790 , HOH G:799
BINDING SITE FOR RESIDUE NAD G 400
19
CC1
SOFTWARE
HIS G:155 , THR G:160 , VAL G:161 , TYR G:164 , GLU G:172 , THR G:173 , HIS G:176 , TYR G:234 , TRP G:271 , HOH G:700 , HOH G:726 , HOH G:769 , HOH G:807 , HOH G:808
BINDING SITE FOR RESIDUE EPE G 401
20
CC2
SOFTWARE
ASP G:130 , GLY G:132 , PRO G:250 , THR G:251 , ARG G:274 , HOH G:779
BINDING SITE FOR RESIDUE EDO G 402
21
CC3
SOFTWARE
VAL H:8 , GLY H:9 , GLY H:11 , MSE H:12 , ILE H:13 , ASP H:35 , ILE H:36 , VAL H:37 , ARG H:40 , THR H:73 , ALA H:74 , SER H:75 , ASN H:76 , HIS H:79 , GLU H:96 , LYS H:97 , PRO H:98 , GLY H:124 , MSE H:126 , TYR H:279 , HOH H:411 , HOH H:422 , HOH H:494 , HOH H:587 , HOH H:667
BINDING SITE FOR RESIDUE NAD H 400
22
CC4
SOFTWARE
HIS H:155 , THR H:160 , VAL H:161 , GLU H:172 , THR H:173 , HIS H:176 , TYR H:234 , TRP H:271 , HOH H:550 , HOH H:655
BINDING SITE FOR RESIDUE EPE H 401
23
CC5
SOFTWARE
LYS F:262 , ALA H:255 , VAL H:257 , SER H:264 , ASP H:266 , HOH H:640
BINDING SITE FOR RESIDUE EDO H 402
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
[
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_3ec7A02 (A:144-265)
1b: CATH_3ec7B02 (B:144-265)
1c: CATH_3ec7C02 (C:144-265)
1d: CATH_3ec7D02 (D:144-265)
1e: CATH_3ec7E02 (E:144-265)
1f: CATH_3ec7F02 (F:144-265)
1g: CATH_3ec7G02 (G:144-265)
1h: CATH_3ec7H02 (H:144-265)
2a: CATH_3ec7A01 (A:2-143,A:266-336)
2b: CATH_3ec7B01 (B:2-143,B:266-336)
2c: CATH_3ec7C01 (C:2-143,C:266-336)
2d: CATH_3ec7D01 (D:2-143,D:266-336)
2e: CATH_3ec7E01 (E:2-143,E:266-336)
2f: CATH_3ec7F01 (F:2-143,F:266-336)
2g: CATH_3ec7G01 (G:2-143,G:266-336)
2h: CATH_3ec7H01 (H:2-143,H:266-336)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Salmonella typhimurium lt2. Organism_taxid: 99287. Strain: lt2.
(1)
1a
3ec7A02
A:144-265
1b
3ec7B02
B:144-265
1c
3ec7C02
C:144-265
1d
3ec7D02
D:144-265
1e
3ec7E02
E:144-265
1f
3ec7F02
F:144-265
1g
3ec7G02
G:144-265
1h
3ec7H02
H:144-265
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Salmonella typhimurium lt2. Organism_taxid: 99287. Strain: lt2.
(2)
2a
3ec7A01
A:2-143,A:266-336
2b
3ec7B01
B:2-143,B:266-336
2c
3ec7C01
C:2-143,C:266-336
2d
3ec7D01
D:2-143,D:266-336
2e
3ec7E01
E:2-143,E:266-336
2f
3ec7F01
F:2-143,F:266-336
2g
3ec7G01
G:2-143,G:266-336
2h
3ec7H01
H:2-143,H:266-336
[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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