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3EBS
Biol. Unit 4
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Asym.Unit (315 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (81 KB)
Biol.Unit 3 (80 KB)
Biol.Unit 4 (82 KB)
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Title
:
HUMAN CYTOCHROME P450 2A6 I208S/I300F/G301A/S369G IN COMPLEX WITH PHENACETIN
Authors
:
N. M. Devore, E. E. Scott
Date
:
28 Aug 08 (Deposition) - 23 Sep 08 (Release) - 09 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Cyp2A6, P450 2A6, Cyp2A13, P450 2A13, Monooxygenase, Oxidoreducatase, Heme, Endoplasmic Reticulum, Iron, Membrane, Metal-Binding, Microsome, Phenacetin, Oxidoreductase, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. M. Devore, B. D. Smith, M. J. Urban, E. E. Scott
Key Residues Controlling Phenacetin Metabolism By Human Cytochrome P4502A Enzymes.
Drug Metab. Dispos. V. 36 2582 2008
(for further references see the
PDB file header
)
[
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]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2a: N-(4-ETHOXYPHENYL)ACETAMIDE (N4Ea)
2b: N-(4-ETHOXYPHENYL)ACETAMIDE (N4Eb)
2c: N-(4-ETHOXYPHENYL)ACETAMIDE (N4Ec)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
N4E
1
Ligand/Ion
N-(4-ETHOXYPHENYL)ACETAMIDE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
N4E D:1 , ARG D:101 , VAL D:117 , ARG D:128 , ALA D:301 , GLY D:302 , THR D:305 , THR D:309 , GLN D:360 , ARG D:372 , PRO D:431 , PHE D:432 , SER D:433 , ARG D:437 , CYS D:439 , PHE D:440 , GLY D:441 , HOH D:714
BINDING SITE FOR RESIDUE HEM D 500
2
AC7
SOFTWARE
PHE D:107 , PHE D:111 , ASN D:297 , PHE D:300 , THR D:305 , LEU D:370 , PHE D:480 , HEM D:500
BINDING SITE FOR RESIDUE N4E D 1
[
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]
SAPs(SNPs)/Variants
(21, 21)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_055035 (V110L, chain D, )
02: VAR_024711 (F118L, chain D, )
03: VAR_055036 (R128L, chain D, )
04: VAR_011577 (R128Q, chain D, )
05: VAR_055037 (S131A, chain D, )
06: VAR_001249 (L160H, chain D, )
07: VAR_018332 (K194E, chain D, )
08: VAR_055034 (R203C, chain D, )
09: VAR_018333 (R203S, chain D, )
10: VAR_024712 (S224P, chain D, )
11: VAR_059149 (V292M, chain D, )
12: VAR_048448 (T294S, chain D, )
13: VAR_024713 (V365M, chain D, )
14: VAR_055033 (Y392Y, chain D, )
15: VAR_024714 (N418D, chain D, )
16: VAR_018375 (E419D, chain D, )
17: VAR_055038 (N438Y, chain D, )
18: VAR_011578 (I471T, chain D, )
19: VAR_024715 (K476R, chain D, )
20: VAR_008356 (G479V, chain D, )
21: VAR_011579 (R485L, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_055035
V
110
L
CP2A6_HUMAN
Polymorphism
72549435
D
V
110
L
02
UniProt
VAR_024711
F
118
L
CP2A6_HUMAN
Polymorphism
28399440
D
F
118
L
03
UniProt
VAR_055036
R
128
L
CP2A6_HUMAN
Polymorphism
---
D
R
128
L
04
UniProt
VAR_011577
R
128
Q
CP2A6_HUMAN
Polymorphism
4986891
D
R
128
Q
05
UniProt
VAR_055037
S
131
A
CP2A6_HUMAN
Polymorphism
59552350
D
S
131
A
06
UniProt
VAR_001249
L
160
H
CP2A6_HUMAN
Polymorphism
1801272
D
L
160
H
07
UniProt
VAR_018332
K
194
E
CP2A6_HUMAN
Polymorphism
---
D
K
194
E
08
UniProt
VAR_055034
R
203
C
CP2A6_HUMAN
Polymorphism
56256500
D
R
203
C
09
UniProt
VAR_018333
R
203
S
CP2A6_HUMAN
Polymorphism
56256500
D
R
203
S
10
UniProt
VAR_024712
S
224
P
CP2A6_HUMAN
Polymorphism
111033610
D
S
224
P
11
UniProt
VAR_059149
V
292
M
CP2A6_HUMAN
Polymorphism
2644906
D
V
292
M
12
UniProt
VAR_048448
T
294
S
CP2A6_HUMAN
Polymorphism
4997557
D
T
294
S
13
UniProt
VAR_024713
V
365
M
CP2A6_HUMAN
Polymorphism
28399454
D
V
365
M
14
UniProt
VAR_055033
F
392
Y
CP2A6_HUMAN
Polymorphism
1809810
D
Y
392
Y
15
UniProt
VAR_024714
N
418
D
CP2A6_HUMAN
Polymorphism
28399463
D
N
418
D
16
UniProt
VAR_018375
E
419
D
CP2A6_HUMAN
Polymorphism
8192730
D
E
419
D
17
UniProt
VAR_055038
N
438
Y
CP2A6_HUMAN
Polymorphism
---
D
N
438
Y
18
UniProt
VAR_011578
I
471
T
CP2A6_HUMAN
Polymorphism
5031016
D
I
471
T
19
UniProt
VAR_024715
K
476
R
CP2A6_HUMAN
Polymorphism
6413474
D
K
476
R
20
UniProt
VAR_008356
G
479
V
CP2A6_HUMAN
Polymorphism
5031017
D
G
479
V
21
UniProt
VAR_011579
R
485
L
CP2A6_HUMAN
Polymorphism
28399468
D
R
485
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (D:432-441)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CP2A6_HUMAN
432-441
1
-
-
-
D:432-441
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ebsa_ (A:)
1b: SCOP_d3ebsb_ (B:)
1c: SCOP_d3ebsc_ (C:)
1d: SCOP_d3ebsd_ (D:)
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(
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
automated matches
(157)
Protein domain
:
automated matches
(157)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d3ebsa_
A:
1b
d3ebsb_
B:
1c
d3ebsc_
C:
1d
d3ebsd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3ebsC00 (C:31-494)
1b: CATH_3ebsD00 (D:31-494)
1c: CATH_3ebsA00 (A:30-494)
1d: CATH_3ebsB00 (B:31-496)
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(
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(
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(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome p450
(271)
Homologous Superfamily
:
Cytochrome p450
(271)
Human (Homo sapiens)
(32)
1a
3ebsC00
C:31-494
1b
3ebsD00
D:31-494
1c
3ebsA00
A:30-494
1d
3ebsB00
B:31-496
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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