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3EB7
Biol. Unit 5
Info
Asym.Unit (312 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (106 KB)
Biol.Unit 3 (106 KB)
Biol.Unit 4 (206 KB)
Biol.Unit 5 (206 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF INSECTICIDAL DELTA-ENDOTOXIN CRY8EA1 FROM BACILLUS THURINGIENSIS AT 2.2 ANGSTROMS RESOLUTION
Authors
:
S. Guo, S. Ye, F. Song, J. Zhang, L. Wei, C. L. Shu
Date
:
27 Aug 08 (Deposition) - 16 Sep 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: B (2x)
Biol. Unit 5: A,C (1x)
Keywords
:
Endotoxin, Cry8E, Bacillus Thuringiensis, Toxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Guo, S. Ye, Y. Liu, L. Wei, J. Xue, H. Wu, F. Song, J. Zhang, X. Wu, D. Huang, Z. Rao
Crystal Structure Of Bacillus Thuringiensis Cry8Ea1: An Insecticidal Toxin Toxic To Underground Pests, The Larvae O Holotrichia Parallela.
J. Struct. Biol. V. 168 259 2009
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC8 (SOFTWARE)
07: AC9 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC6 (SOFTWARE)
12: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:555 , SER A:556 , LYS A:592 , PRO A:595 , ASN A:596 , HOH A:2341
BINDING SITE FOR RESIDUE SO4 A 2008
02
AC2
SOFTWARE
ARG A:352 , LYS A:362 , HOH A:2123 , PHE B:541 , ASN B:542 , SER B:543
BINDING SITE FOR RESIDUE SO4 A 2011
03
AC3
SOFTWARE
ILE A:378 , ILE B:485 , ARG B:486
BINDING SITE FOR RESIDUE ACT A 2014
04
AC4
SOFTWARE
PHE A:612 , SER A:613 , THR A:614 , SER B:161 , ARG B:163 , HOH B:2153 , HOH B:2383
BINDING SITE FOR RESIDUE SO4 B 2001
05
AC6
SOFTWARE
SER A:353 , LYS A:363 , ARG A:486 , HOH A:2102 , GLN B:620 , ALA B:621 , GLN B:622 , HOH B:2062 , HOH B:2160
BINDING SITE FOR RESIDUE SO4 B 2005
06
AC8
SOFTWARE
THR A:380 , HOH A:2094 , PRO B:324 , SER B:325 , THR B:328
BINDING SITE FOR RESIDUE SO4 B 2007
07
AC9
SOFTWARE
GLN A:372 , HOH A:2174 , HOH A:2205 , THR B:385 , SER B:390 , ARG B:486
BINDING SITE FOR RESIDUE SO4 B 2010
08
BC3
SOFTWARE
ASN C:586 , ASN C:587 , LYS C:603 , GLU C:605 , PHE C:612 , SER C:613 , THR C:614 , HOH C:2072
BINDING SITE FOR RESIDUE SO4 C 2003
09
BC4
SOFTWARE
ARG C:291 , ARG C:563 , ARG C:565 , LYS C:592 , PRO C:595 , ASN C:596 , SER C:611
BINDING SITE FOR RESIDUE SO4 C 2004
10
BC5
SOFTWARE
ALA C:416 , TYR C:417 , THR C:418 , SER C:419
BINDING SITE FOR RESIDUE SO4 C 2009
11
BC6
SOFTWARE
GLY C:258 , SER C:259 , GLN C:263 , LYS C:510
BINDING SITE FOR RESIDUE SO4 C 2013
12
BC7
SOFTWARE
ASN C:445 , HOH C:2126 , HOH C:2278
BINDING SITE FOR RESIDUE ACT C 2016
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 9)
Info
All SCOP Domains
1a: SCOP_d3eb7a2 (A:292-501)
1b: SCOP_d3eb7b2 (B:292-501)
1c: SCOP_d3eb7c2 (C:292-501)
2a: SCOP_d3eb7a3 (A:502-652)
2b: SCOP_d3eb7b3 (B:502-652)
2c: SCOP_d3eb7c3 (C:502-652)
3a: SCOP_d3eb7a1 (A:64-291)
3b: SCOP_d3eb7b1 (B:64-291)
3c: SCOP_d3eb7c1 (C:64-291)
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Classes
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)
(
)
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
delta-Endotoxin (insectocide), middle domain
(7)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Bacillus thuringiensis [TaxId: 1428]
(1)
1a
d3eb7a2
A:292-501
1b
d3eb7b2
B:292-501
1c
d3eb7c2
C:292-501
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Bacillus thuringiensis [TaxId: 1428]
(1)
2a
d3eb7a3
A:502-652
2b
d3eb7b3
B:502-652
2c
d3eb7c3
C:502-652
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
delta-Endotoxin (insectocide), N-terminal domain
(7)
Family
:
automated matches
(2)
Protein domain
:
automated matches
(2)
Bacillus thuringiensis [TaxId: 1428]
(1)
3a
d3eb7a1
A:64-291
3b
d3eb7b1
B:64-291
3c
d3eb7c1
C:64-291
[
close SCOP info
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_3eb7A01 (A:64-291)
1b: CATH_3eb7B01 (B:64-291)
1c: CATH_3eb7C01 (C:64-291)
2a: CATH_3eb7A03 (A:303-499)
2b: CATH_3eb7B03 (B:303-499)
2c: CATH_3eb7C03 (C:303-499)
3a: CATH_3eb7A02 (A:292-302,A:500-652)
3b: CATH_3eb7B02 (B:292-302,B:500-652)
3c: CATH_3eb7C02 (C:292-302,C:500-652)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Delta-Endotoxin; domain 1
(33)
Homologous Superfamily
:
[code=1.20.190.10, no name defined]
(5)
Bacillus thuringiensis. Organism_taxid: 1428. Strain: bt185.
(1)
1a
3eb7A01
A:64-291
1b
3eb7B01
B:64-291
1c
3eb7C01
C:64-291
Class
:
Mainly Beta
(13760)
Architecture
:
Aligned Prism
(39)
Topology
:
Vitelline Membrane Outer Layer Protein I, subunit A
(39)
Homologous Superfamily
:
[code=2.100.10.10, no name defined]
(5)
Bacillus thuringiensis. Organism_taxid: 1428. Strain: bt185.
(1)
2a
3eb7A03
A:303-499
2b
3eb7B03
B:303-499
2c
3eb7C03
C:303-499
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Bacillus thuringiensis. Organism_taxid: 1428. Strain: bt185.
(1)
3a
3eb7A02
A:292-302,A:500-652
3b
3eb7B02
B:292-302,B:500-652
3c
3eb7C02
C:292-302,C:500-652
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (312 KB)
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