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3EAO
Asym. Unit
Info
Asym.Unit (472 KB)
Biol.Unit 1 (160 KB)
Biol.Unit 2 (160 KB)
Biol.Unit 3 (159 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RECOMBINANT RAT SELENOPROTEIN THIOREDOXIN REDUCTASE 1 WITH OXIDIZED C-TERMINAL TAIL
Authors
:
T. Sandalova, Q. Cheng, Y. Lindqvist, E. Arner
Date
:
26 Aug 08 (Deposition) - 02 Dec 08 (Release) - 06 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Selenoprotein, Mammalian Thioredoxin Reductase 1, Selenocysteine, Selenenylsulfide, Fad, Flavoprotein, Nadp, Oxidoreductase, Phosphoprotein, Redox-Active Center, Selenium
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Cheng, T. Sandalova, Y. Lindqvist, E. S. Arner
Crystal Structure And Catalysis Of The Selenoprotein Thioredoxin Reductase 1.
J. Biol. Chem. V. 284 3998 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
1e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
1f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
2e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
2f: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPf)
3a: (SECa)
3b: (SECb)
3c: (SECc)
3d: (SECd)
3e: (SECe)
3f: (SECf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
6
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
NAP
6
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
SEC
6
Mod. Amino Acid
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:19 , GLY A:20 , GLY A:21 , SER A:22 , GLY A:23 , LEU A:41 , ASP A:42 , PHE A:43 , GLY A:57 , THR A:58 , CYS A:59 , VAL A:62 , GLY A:63 , CYS A:64 , LYS A:67 , ALA A:130 , TYR A:131 , GLY A:132 , ALA A:160 , THR A:161 , GLY A:162 , ARG A:293 , ILE A:300 , GLY A:333 , ASP A:334 , GLU A:341 , LEU A:342 , THR A:343 , PRO A:344 , PHE A:375 , HIS B:472
BINDING SITE FOR RESIDUE FAD A 600
02
AC2
SOFTWARE
LEU A:168 , ALA A:198 , SER A:199 , TYR A:200 , VAL A:201 , ARG A:221 , SER A:222 , ARG A:226 , VAL A:252 , ALA A:290 , VAL A:291 , GLY A:292 , ARG A:293
BINDING SITE FOR RESIDUE NAP A 601
03
AC3
SOFTWARE
HIS A:472 , ILE B:18 , GLY B:19 , GLY B:20 , GLY B:21 , SER B:22 , GLY B:23 , LEU B:41 , ASP B:42 , PHE B:43 , GLY B:57 , THR B:58 , CYS B:59 , VAL B:62 , GLY B:63 , CYS B:64 , LYS B:67 , ALA B:130 , TYR B:131 , GLY B:132 , ALA B:160 , THR B:161 , GLY B:162 , SER B:180 , ARG B:293 , ILE B:300 , GLY B:333 , ASP B:334 , GLU B:341 , LEU B:342 , THR B:343 , PRO B:344 , PHE B:375
BINDING SITE FOR RESIDUE FAD B 600
04
AC4
SOFTWARE
LEU B:168 , ALA B:198 , SER B:199 , TYR B:200 , VAL B:201 , ARG B:221 , SER B:222 , ARG B:226 , VAL B:252 , VAL B:291 , GLY B:292 , ARG B:293
BINDING SITE FOR RESIDUE NAP B 601
05
AC5
SOFTWARE
ILE C:18 , GLY C:19 , GLY C:20 , GLY C:21 , SER C:22 , GLY C:23 , LEU C:41 , ASP C:42 , PHE C:43 , GLY C:57 , THR C:58 , CYS C:59 , VAL C:62 , GLY C:63 , CYS C:64 , LYS C:67 , ALA C:130 , TYR C:131 , GLY C:132 , ALA C:160 , THR C:161 , GLY C:162 , ARG C:293 , ILE C:300 , GLY C:333 , ASP C:334 , GLU C:341 , LEU C:342 , THR C:343 , PRO C:344 , PHE C:375 , HIS D:472
BINDING SITE FOR RESIDUE FAD C 600
06
AC6
SOFTWARE
LEU C:168 , ALA C:198 , SER C:199 , TYR C:200 , VAL C:201 , ARG C:221 , SER C:222 , ARG C:226 , VAL C:252 , ALA C:290 , VAL C:291 , GLY C:292 , ARG C:293
BINDING SITE FOR RESIDUE NAP C 601
07
AC7
SOFTWARE
HIS C:472 , GLY D:19 , GLY D:20 , GLY D:21 , SER D:22 , GLY D:23 , LEU D:41 , ASP D:42 , PHE D:43 , GLY D:57 , THR D:58 , CYS D:59 , VAL D:62 , GLY D:63 , CYS D:64 , LYS D:67 , ALA D:130 , TYR D:131 , GLY D:132 , ALA D:160 , THR D:161 , GLY D:162 , ARG D:293 , ILE D:300 , GLY D:333 , ASP D:334 , GLU D:341 , LEU D:342 , THR D:343 , PRO D:344
BINDING SITE FOR RESIDUE FAD D 600
08
AC8
SOFTWARE
LEU D:168 , ALA D:198 , SER D:199 , TYR D:200 , VAL D:201 , ARG D:221 , SER D:222 , ARG D:226 , VAL D:252 , ALA D:290 , VAL D:291 , GLY D:292 , ARG D:293
BINDING SITE FOR RESIDUE NAP D 601
09
AC9
SOFTWARE
GLY E:19 , GLY E:20 , GLY E:21 , SER E:22 , GLY E:23 , LEU E:41 , ASP E:42 , PHE E:43 , GLY E:57 , THR E:58 , CYS E:59 , VAL E:62 , GLY E:63 , CYS E:64 , LYS E:67 , ALA E:130 , TYR E:131 , GLY E:132 , ALA E:160 , THR E:161 , GLY E:162 , ARG E:293 , ILE E:300 , GLY E:333 , ASP E:334 , GLU E:341 , LEU E:342 , THR E:343 , PRO E:344 , PHE E:375 , HIS F:472
BINDING SITE FOR RESIDUE FAD E 600
10
BC1
SOFTWARE
LEU E:168 , ALA E:198 , SER E:199 , TYR E:200 , VAL E:201 , ARG E:221 , SER E:222 , ARG E:226 , VAL E:252 , ALA E:290 , VAL E:291 , GLY E:292 , ARG E:293
BINDING SITE FOR RESIDUE NAP E 601
11
BC2
SOFTWARE
HIS E:472 , ILE F:18 , GLY F:19 , GLY F:20 , GLY F:21 , SER F:22 , GLY F:23 , GLY F:24 , LEU F:41 , ASP F:42 , PHE F:43 , GLY F:57 , THR F:58 , CYS F:59 , VAL F:62 , GLY F:63 , CYS F:64 , LYS F:67 , ALA F:130 , TYR F:131 , GLY F:132 , ALA F:160 , THR F:161 , GLY F:162 , VAL F:201 , ARG F:293 , ILE F:300 , GLY F:333 , ASP F:334 , GLU F:341 , LEU F:342 , THR F:343 , PRO F:344 , PHE F:375
BINDING SITE FOR RESIDUE FAD F 600
12
BC3
SOFTWARE
LEU F:168 , ALA F:198 , SER F:199 , TYR F:200 , VAL F:201 , ARG F:221 , SER F:222 , ARG F:226 , VAL F:252 , ALA F:290 , VAL F:291 , GLY F:292 , ARG F:293
BINDING SITE FOR RESIDUE NAP F 601
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: PYRIDINE_REDOX_1 (A:56-66,B:56-66,C:56-66,D:56-66,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
TRXR1_RAT
56-66
6
A:56-66
B:56-66
C:56-66
D:56-66
E:56-66
F:56-66
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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