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3E9Y
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (185 KB)
Biol.Unit 2 (367 KB)
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(1)
Title
:
ARABIDOPSIS THALIANA ACETOHYDROXYACID SYNTHASE IN COMPLEX WITH MONOSULFURON
Authors
:
L. W. Guddat, R. G. Duggleby, J. -G. Wang, Z. -M. Li
Date
:
24 Aug 08 (Deposition) - 31 Mar 09 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Biol. Unit 2: A (4x)
Keywords
:
Protein-Fad-Hethdp Complex, Amino-Acid Biosynthesis, Branched-Chain Amino Acid Biosynthesis, Chloroplast, Fad, Flavoprotein, Herbicide Resistance, Magnesium, Metal-Binding, Thiamine Pyrophosphate, Transferase, Transit Peptide
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Reference
:
J. -G. Wang, P. K. Lee, Y. -H. Dong, S. S. Pang, R. G. Duggleby, Z. -M. Li, L. W. Guddat
Crystal Structures Of Two Novel Sulfonylurea Herbicides In Complex With Arabidopsis Thaliana Acetohydroxyacid Synthase
Febs J. V. 276 1282 2009
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Hetero Components
(6, 6)
Info
All Hetero Components
1a: N-[(4-METHYLPYRIMIDIN-2-YL)CARBAMO... (1MSa)
2a: 3-SULFINOALANINE (CSDa)
3a: FLAVIN-ADENINE DINUCLEOTIDE-N5-ISO... (FABa)
4a: MAGNESIUM ION (MGa)
5a: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEa)
6a: 2-[(2E)-3-[(4-AMINO-2-METHYLPYRIMI... (TDMa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1MS
1
Ligand/Ion
N-[(4-METHYLPYRIMIDIN-2-YL)CARBAMOYL]-2-NITROBENZENESULFONAMIDE
2
CSD
1
Mod. Amino Acid
3-SULFINOALANINE
3
FAB
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE-N5-ISOBUTYL KETONE
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
NHE
1
Ligand/Ion
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
6
TDM
1
Ligand/Ion
2-[(2E)-3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-(1-HYDROXYETHYLIDENE)-4-METHYL-2,3-DIHYDRO-1,3-THIAZOL-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:121 , ALA A:122 , VAL A:196 , PRO A:197 , MET A:200 , PHE A:206 , LYS A:256 , ASP A:376 , ARG A:377 , MET A:570 , TRP A:574 , SER A:653
BINDING SITE FOR RESIDUE 1MS A 695
2
AC2
SOFTWARE
LYS A:220 , HIS A:221 , LEU A:273 , PRO A:274 , GLY A:275 , TYR A:276
BINDING SITE FOR RESIDUE NHE A 696
3
AC3
SOFTWARE
ASP A:538 , ASN A:565 , HIS A:567 , TDM A:700
BINDING SITE FOR RESIDUE MG A 699
4
AC4
SOFTWARE
TYR A:118 , PRO A:119 , GLY A:120 , GLU A:144 , PRO A:170 , ASN A:174 , GLN A:207 , VAL A:485 , GLY A:486 , GLN A:487 , HIS A:488 , GLY A:511 , MET A:513 , GLY A:537 , ASP A:538 , GLY A:539 , SER A:540 , ASN A:565 , HIS A:567 , LEU A:568 , GLY A:569 , MET A:570 , VAL A:571 , MG A:699
BINDING SITE FOR RESIDUE TDM A 700
5
AC5
SOFTWARE
LEU A:184 , PHE A:206 , ARG A:246 , GLY A:307 , GLY A:308 , GLY A:309 , THR A:331 , LEU A:332 , MET A:333 , LEU A:349 , MET A:351 , HIS A:352 , GLY A:371 , VAL A:372 , ARG A:373 , ASP A:375 , ARG A:377 , ASP A:395 , ILE A:396 , ASP A:397 , GLU A:400 , GLY A:413 , ASP A:414 , VAL A:415 , GLN A:489 , MET A:490 , SER A:507 , GLY A:508 , GLY A:509 , HOH A:710 , HOH A:734
BINDING SITE FOR RESIDUE FAB A 701
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TPP_ENZYMES (A:521-540)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPP_ENZYMES
PS00187
Thiamine pyrophosphate enzymes signature.
ILVB_ARATH
521-540
1
A:521-540
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d3e9ya2 (A:281-459)
2a: SCOP_d3e9ya1 (A:87-280)
2b: SCOP_d3e9ya3 (A:460-668)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(2)
1a
d3e9ya2
A:281-459
Fold
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Superfamily
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Family
:
automated matches
(65)
Protein domain
:
automated matches
(65)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(2)
2a
d3e9ya1
A:87-280
2b
d3e9ya3
A:460-668
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_3e9yA01 (A:87-280)
1b: CATH_3e9yA03 (A:454-647)
2a: CATH_3e9yA02 (A:281-453,A:648-668)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.970, no name defined]
(144)
Mouse-ear cress (Arabidopsis thaliana)
(2)
1a
3e9yA01
A:87-280
1b
3e9yA03
A:454-647
Homologous Superfamily
:
TPP-binding domain
(120)
Mouse-ear cress (Arabidopsis thaliana)
(2)
2a
3e9yA02
A:281-453,A:648-668
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (101 KB)
Header - Asym.Unit
Biol.Unit 1 (185 KB)
Header - Biol.Unit 1
Biol.Unit 2 (367 KB)
Header - Biol.Unit 2
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