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3E9Q
Asym. Unit
Info
Asym.Unit (192 KB)
Biol.Unit 1 (186 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SHORT CHAIN DEHYDROGENASE FROM SHIGELLA FLEXNERI
Authors
:
Y. Kim, X. Xu, H. Cui, A. Savchenko, A. Edwards, A. Joachimiak, Midwest For Structural Genomics (Mcsg)
Date
:
23 Aug 08 (Deposition) - 23 Sep 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha-Beta-Alpha Sandwich, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, X. Xu, H. Cui, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of The Short Chain Dehydrogenase From Shigella Flexneri
To Be Published
[
close entry info
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Hetero Components
(5, 30)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: GLYCEROL (GOLa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
5a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
1
Ligand/Ion
GLYCEROL
3
MSE
22
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
4
Ligand/Ion
SULFATE ION
5
ZN
1
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY B:19 , ALA B:20 , SER B:21 , GLY B:43 , ARG B:44 , ASN B:45 , HOH B:364 , HOH B:472 , HOH B:500
BINDING SITE FOR RESIDUE SO4 B 253
2
AC2
SOFTWARE
GLY A:19 , ALA A:20 , SER A:21 , ASP A:22 , GLY A:43 , ARG A:44 , ASN A:45 , HOH A:336 , HOH A:372
BINDING SITE FOR RESIDUE SO4 A 253
3
AC3
SOFTWARE
SER B:153 , GLY B:195 , GLY B:196 , ARG B:202 , ARG B:246 , PRO B:248 , GLY B:249 , HOH B:355 , HOH B:405 , HOH B:449 , HOH B:477
BINDING SITE FOR RESIDUE SO4 B 254
4
AC4
SOFTWARE
SER A:153 , GLY A:195 , GLY A:196 , ARG A:202 , ARG A:246 , PRO A:248 , GLY A:249 , HOH A:294 , HOH A:347 , HOH A:427 , HOH A:428
BINDING SITE FOR RESIDUE SO4 A 254
5
AC5
SOFTWARE
ASP A:22 , GLY A:23 , ARG A:26 , ALA A:200 , HOH A:303 , HOH A:328
BINDING SITE FOR RESIDUE EDO A 255
6
AC6
SOFTWARE
GLN A:118 , THR B:75 , SER B:76 , ARG B:234
BINDING SITE FOR RESIDUE EDO A 256
7
AC7
SOFTWARE
TYR B:3 , TYR B:35 , LEU B:225 , HOH B:324 , HOH B:344 , HOH B:487
BINDING SITE FOR RESIDUE GOL B 255
8
AC8
SOFTWARE
ARG B:34 , GLU B:59
BINDING SITE FOR RESIDUE ZN B 256
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:152-180,B:152-180)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
YCIK_ECOLI
152-180
2
A:152-180
B:152-180
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3e9qa_ (A:)
1b: SCOP_d3e9qb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Shigella flexneri [TaxId: 198214]
(1)
1a
d3e9qa_
A:
1b
d3e9qb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3e9qA00 (A:-2-252)
1b: CATH_3e9qB00 (B:-5-250)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
301 (Shigella flexneri 2a str)
(1)
1a
3e9qA00
A:-2-252
1b
3e9qB00
B:-5-250
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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