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3E94
Asym. Unit
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Asym.Unit (45 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (79 KB)
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Title
:
CRYSTAL STRUCTURE OF RXRALPHA LIGAND BINDING DOMAIN IN COMPLEX WITH TRIBUTYLTIN AND A COACTIVATOR FRAGMENT
Authors
:
W. Bourguet, A. Le Maire
Date
:
21 Aug 08 (Deposition) - 10 Mar 09 (Release) - 14 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Protein-Ligand Complex, Dna-Binding, Host-Virus Interaction, Metal-Binding, Nucleus, Polymorphism, Receptor, Transcription, Transcription Regulation, Ubl Conjugation, Zinc, Zinc-Finger, Activator, Phosphoprotein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Le Maire, M. Grimaldi, D. Roecklin, S. Dagnino, V. Vivat-Hannah, P. Balaguer, W. Bourguet
Activation Of Rxr-Ppar Heterodimers By Organotin Environmental Endocrine Disruptors
Embo Rep. V. 10 367 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: TRIBUTYLSTANNANYL (TBYa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
TBY
1
Ligand/Ion
TRIBUTYLSTANNANYL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:268 , TRP A:305 , ASN A:306 , ILE A:345 , PHE A:346 , VAL A:349 , CYS A:432 , HIS A:435 , PHE A:439
BINDING SITE FOR RESIDUE TBY A 1
2
AC2
SOFTWARE
ALA A:271 , ALA A:272 , GLN A:275 , PHE A:313 , ARG A:316 , LEU A:326 , ALA A:327 , HOH A:600
BINDING SITE FOR RESIDUE ACT A 463
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050582 (A327S, chain A, )
2: VAR_014621 (S336I, chain A, )
3: VAR_050583 (A398V, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050582
A
327
S
RXRA_HUMAN
Polymorphism
1805345
A
A
327
S
2
UniProt
VAR_014621
S
336
I
RXRA_HUMAN
Polymorphism
1805345
A
S
336
I
3
UniProt
VAR_050583
A
398
V
RXRA_HUMAN
Polymorphism
11542209
A
A
398
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d3e94a_ (A:)
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Class
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All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Retinoid-X receptor alpha (RXR-alpha)
(36)
Human (Homo sapiens) [TaxId: 9606]
(33)
1a
d3e94a_
A:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (45 KB)
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