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3E88
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF THE KINASE DOMAIN OF AKT2 IN COMPLEX WITH ATP-COMPETITIVE INHIBITORS
Authors
:
N. O. Concha, P. A. Elkins, A. Smallwood, P. Ward
Date
:
19 Aug 08 (Deposition) - 14 Oct 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Akt2, Kinase, Gsk3 Beta, Atp-Binding, Nucleotide-Binding, Phosphoprotein, Serine/Threonine-Protein Kinase, Transferase, Wnt Signaling Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. B. Rouse, M. A. Seefeld, J. D. Leber, K. C. Mcnulty, L. Sun, W. H. Miller, S. Zhang, E. A. Minthorn, N. O. Concha, A. E. Choudhry, M. D. Schaber, D. A. Heerding
Aminofurazans As Potent Inhibitors Of Akt Kinase
Bioorg. Med. Chem. Lett. V. 19 1508 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: 4-[2-(4-AMINO-1,2,5-OXADIAZOL-3-YL... (G96a)
1b: 4-[2-(4-AMINO-1,2,5-OXADIAZOL-3-YL... (G96b)
2a: PHOSPHOTHREONINE (TPOa)
2b: PHOSPHOTHREONINE (TPOb)
2c: PHOSPHOTHREONINE (TPOc)
2d: PHOSPHOTHREONINE (TPOd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
G96
2
Ligand/Ion
4-[2-(4-AMINO-1,2,5-OXADIAZOL-3-YL)-6-{[(2R)-2-AMINO-3-PHENYLPROPYL]OXY}-1-ETHYL-1H-IMIDAZO[4,5-C]PYRIDIN-4-YL]-2-METHYLBUT-3-YN-2-OL
2
TPO
4
Mod. Amino Acid
PHOSPHOTHREONINE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:159 , GLY A:161 , GLY A:164 , LYS A:165 , VAL A:166 , ALA A:179 , LYS A:181 , LEU A:183 , GLU A:200 , PHE A:227 , MET A:229 , GLU A:230 , TYR A:231 , ALA A:232 , MET A:282 , THR A:292 , ASP A:293 , PHE A:294 , PHE A:439
BINDING SITE FOR RESIDUE G96 A 1
2
AC2
SOFTWARE
GLY B:159 , GLY B:164 , LYS B:165 , VAL B:166 , ALA B:179 , LYS B:181 , LEU B:183 , GLU B:200 , MET B:229 , GLU B:230 , TYR B:231 , ALA B:232 , MET B:282 , THR B:292 , ASP B:293 , PHE B:294 , PHE B:439 , SER D:9
BINDING SITE FOR RESIDUE G96 B 1
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_040356 (I188V, chain A/B, )
2: VAR_040357 (R208K, chain A/B, )
3: VAR_067310 (R274H, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040356
I
188
V
AKT2_HUMAN
Polymorphism
55859611
A/B
I
188
V
2
UniProt
VAR_040357
R
208
K
AKT2_HUMAN
Polymorphism
35817154
A/B
R
208
K
3
UniProt
VAR_067310
R
274
H
AKT2_HUMAN
Disease (NIDDM)
---
A/B
R
274
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:158-191,B:158-191)
2: PROTEIN_KINASE_ST (A:271-283,B:271-283)
3: AGC_KINASE_CTER (A:410-480,B:410-480)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
AKT2_HUMAN
158-191
2
A:158-191
B:158-191
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
AKT2_HUMAN
271-283
2
A:271-283
B:271-283
3
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
AKT2_HUMAN
410-481
2
A:410-480
B:410-480
[
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]
Exons
(11, 22)
Info
All Exons
Exon 1.1a (C:3-12 | D:3-12)
Exon 2.14h (A:146-147 | B:146-147)
Exon 2.15a (A:148-191 | B:148-191)
Exon 2.17a (A:192-213 | B:192-213)
Exon 2.18b (A:214-236 | B:214-236)
Exon 2.19a (A:237-277 | B:237-277)
Exon 2.19e (A:278-320 | B:278-320)
Exon 2.19j (A:321-392 | B:321-392)
Exon 2.20b (A:392-421 | B:392-421)
Exon 2.21a (A:422-451 | B:422-451)
Exon 2.23g (A:466-480 | B:466-480)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 2.13b/2.14h
04: Boundary 2.14h/2.15a
05: Boundary 2.15a/2.17a
06: Boundary 2.17a/2.18b
07: Boundary 2.18b/2.19a
08: Boundary 2.19a/2.19e
09: Boundary 2.19e/2.19j
10: Boundary 2.19j/2.20b
11: Boundary 2.20b/2.21a
12: Boundary 2.21a/2.23g
13: Boundary 2.23g/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000264235
1a
ENSE00001206838
chr3:
119813264-119812194
1071
GSK3B_HUMAN
1-30
30
2
C:3-12
D:3-12
10
10
1.2
ENST00000264235
2
ENSE00001206832
chr3:
119721086-119720893
194
GSK3B_HUMAN
30-94
65
0
-
-
1.3
ENST00000264235
3
ENSE00001076166
chr3:
119666198-119666115
84
GSK3B_HUMAN
95-122
28
0
-
-
1.4
ENST00000264235
4
ENSE00001012216
chr3:
119642330-119642220
111
GSK3B_HUMAN
123-159
37
0
-
-
1.5
ENST00000264235
5
ENSE00001012214
chr3:
119635021-119634891
131
GSK3B_HUMAN
160-203
44
0
-
-
1.6
ENST00000264235
6
ENSE00001012215
chr3:
119631657-119631551
107
GSK3B_HUMAN
203-239
37
0
-
-
1.7
ENST00000264235
7
ENSE00000823656
chr3:
119624699-119624602
98
GSK3B_HUMAN
239-271
33
0
-
-
1.8
ENST00000264235
8
ENSE00001012184
chr3:
119595355-119595260
96
GSK3B_HUMAN
272-303
32
0
-
-
1.10
ENST00000264235
10
ENSE00001012181
chr3:
119582452-119582266
187
GSK3B_HUMAN
304-366
63
0
-
-
1.11b
ENST00000264235
11b
ENSE00001149998
chr3:
119562200-119562102
99
GSK3B_HUMAN
366-399
34
0
-
-
1.12d
ENST00000264235
12d
ENSE00001863284
chr3:
119545702-119540170
5533
GSK3B_HUMAN
399-420
22
0
-
-
2.1a
ENST00000392038
1a
ENSE00001854668
chr19:
40791302-40791088
215
AKT2_HUMAN
-
0
0
-
-
2.11b
ENST00000392038
11b
ENSE00002200789
chr19:
40771258-40771129
130
AKT2_HUMAN
1-16
16
0
-
-
2.12c
ENST00000392038
12c
ENSE00000877681
chr19:
40762961-40762833
129
AKT2_HUMAN
16-59
44
0
-
-
2.13b
ENST00000392038
13b
ENSE00001651589
chr19:
40761176-40761065
112
AKT2_HUMAN
59-96
38
0
-
-
2.14h
ENST00000392038
14h
ENSE00000877679
chr19:
40748594-40748441
154
AKT2_HUMAN
96-147
52
2
A:146-147
B:146-147
2
2
2.15a
ENST00000392038
15a
ENSE00001637769
chr19:
40747976-40747845
132
AKT2_HUMAN
148-191
44
2
A:148-191
B:148-191
44
44
2.17a
ENST00000392038
17a
ENSE00000706497
chr19:
40746017-40745952
66
AKT2_HUMAN
192-213
22
2
A:192-213
B:192-213
22
22
2.18b
ENST00000392038
18b
ENSE00001776014
chr19:
40744880-40744812
69
AKT2_HUMAN
214-236
23
2
A:214-236
B:214-236
23
23
2.19a
ENST00000392038
19a
ENSE00000706492
chr19:
40743998-40743876
123
AKT2_HUMAN
237-277
41
2
A:237-277
B:237-277
41
41
2.19e
ENST00000392038
19e
ENSE00001745899
chr19:
40742292-40742164
129
AKT2_HUMAN
278-320
43
2
A:278-320
B:278-320
43
43
2.19j
ENST00000392038
19j
ENSE00001638888
chr19:
40742011-40741797
215
AKT2_HUMAN
321-392
72
2
A:321-392
B:321-392
72
72
2.20b
ENST00000392038
20b
ENSE00000706486
chr19:
40741257-40741170
88
AKT2_HUMAN
392-421
30
2
A:392-421
B:392-421
30
30
2.21a
ENST00000392038
21a
ENSE00000706484
chr19:
40741054-40740952
103
AKT2_HUMAN
422-456
35
2
A:422-451
B:422-451
30
30
2.23g
ENST00000392038
23g
ENSE00001510510
chr19:
40739858-40736224
3635
AKT2_HUMAN
456-481
26
2
A:466-480
B:466-480
15
15
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3e88a_ (A:)
1b: SCOP_d3e88b_ (B:)
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(
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(
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Pkb kinase (Akt-2)
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d3e88a_
A:
1b
d3e88b_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3e88A01 (A:146-235,A:430-473)
1b: CATH_3e88B01 (B:146-235,B:430-473)
2a: CATH_3e88A02 (A:236-429)
2b: CATH_3e88B02 (B:236-429)
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(
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(
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(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
3e88A01
A:146-235,A:430-473
1b
3e88B01
B:146-235,B:430-473
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
3e88A02
A:236-429
2b
3e88B02
B:236-429
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (118 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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