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3E7B
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (56 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROTEIN PHOSPHATASE-1 BOUND TO THE NATURAL TOXIN INHIBITOR TAUTOMYCIN
Authors
:
M. S. Kelker, R. Page, W. Peti
Date
:
18 Aug 08 (Deposition) - 04 Nov 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Protein Phosphatase 1, Tautomycin, Molecular Toxin, Carbohydrate Metabolism, Cell Cycle, Cell Division, Glycogen Metabolism, Hydrolase, Iron, Manganese, Metal-Binding, Phosphoprotein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. S. Kelker, R. Page, W. Peti
Crystal Structures Of Protein Phosphatase-1 Bound To Nodularin-R And Tautomycin: A Novel Scaffold For Structure-Based Drug Design Of Serine/Threonine Phosphatase Inhibitors
J. Mol. Biol. V. 385 11 2009
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Hetero Components
(6, 15)
Info
All Hetero Components
1a: AZIDE ION (AZIa)
1b: AZIDE ION (AZIb)
1c: AZIDE ION (AZIc)
1d: AZIDE ION (AZId)
1e: AZIDE ION (AZIe)
1f: AZIDE ION (AZIf)
2a: CHLORIDE ION (CLa)
3a: (2Z)-2-[(1R)-3-{[(1R,2S,3R,6S,7S,1... (E7Ba)
3b: (2Z)-2-[(1R)-3-{[(1R,2S,3R,6S,7S,1... (E7Bb)
4a: GLYCEROL (GOLa)
5a: MANGANESE (II) ION (MNa)
5b: MANGANESE (II) ION (MNb)
5c: MANGANESE (II) ION (MNc)
5d: MANGANESE (II) ION (MNd)
6a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AZI
6
Ligand/Ion
AZIDE ION
2
CL
1
Ligand/Ion
CHLORIDE ION
3
E7B
2
Ligand/Ion
(2Z)-2-[(1R)-3-{[(1R,2S,3R,6S,7S,10R)-10-{(2S,3S,6R,8S,9R)-3,9-DIMETHYL-8-[(3S)-3-METHYL-4-OXOPENTYL]-1,7-DIOXASPIRO[5.5]UNDEC-2-YL}-3,7-DIHYDROXY-2-METHOXY-6-METHYL-1-(1-METHYLETHYL)-5-OXOUNDECYL]OXY}-1-HYDROXY-3-OXOPROPYL]-3-METHYLBUT-2-ENEDIOIC ACID
4
GOL
1
Ligand/Ion
GLYCEROL
5
MN
4
Ligand/Ion
MANGANESE (II) ION
6
NA
1
Ligand/Ion
SODIUM ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:64 , HIS A:66 , ASP A:92 , MN A:401 , HOH A:752 , HOH A:759
BINDING SITE FOR RESIDUE MN A 400
02
AC2
SOFTWARE
ASP A:92 , ASN A:124 , HIS A:173 , HIS A:248 , MN A:400 , HOH A:759
BINDING SITE FOR RESIDUE MN A 401
03
AC3
SOFTWARE
ARG A:96 , CYS A:127 , ILE A:130 , TYR A:134 , VAL A:195 , PRO A:196 , ASP A:197 , ASP A:220 , ARG A:221 , GLY A:222 , HIS A:248 , GLN A:249 , VAL A:250 , TYR A:272 , PHE A:276 , HOH A:516 , HOH A:540 , HOH A:595 , HOH A:602 , HOH A:614 , HOH A:665 , HOH A:735 , HOH A:752
BINDING SITE FOR RESIDUE E7B A 500
04
AC4
SOFTWARE
GLY A:215 , GLY A:228 , ALA A:229 , GLU A:230 , VAL A:231 , HOH A:705
BINDING SITE FOR RESIDUE CL A 1
05
AC5
SOFTWARE
GLN A:49 , PRO A:50 , LEU A:53 , GLU A:54 , GLU A:116 , HOH A:660 , HOH A:746 , HOH A:777
BINDING SITE FOR RESIDUE GOL A 501
06
AC6
SOFTWARE
PRO A:82 , SER A:85 , ASN A:117 , PHE A:118
BINDING SITE FOR RESIDUE NA A 502
07
AC7
SOFTWARE
GLN A:249 , GLU A:256 , HOH A:548 , HOH A:783
BINDING SITE FOR RESIDUE AZI A 2
08
AC8
SOFTWARE
PHE A:258 , ALA A:259 , LYS A:260 , ARG A:261 , HOH A:768
BINDING SITE FOR RESIDUE AZI A 503
09
AC9
SOFTWARE
LEU A:47 , MET A:190 , ARG A:191 , HOH A:592
BINDING SITE FOR RESIDUE AZI A 504
10
BC1
SOFTWARE
GLU A:252 , HOH A:696
BINDING SITE FOR RESIDUE AZI A 505
11
BC2
SOFTWARE
ASP B:64 , HIS B:66 , ASP B:92 , MN B:401 , HOH B:699 , HOH B:700
BINDING SITE FOR RESIDUE MN B 400
12
BC3
SOFTWARE
ASP B:92 , ASN B:124 , HIS B:173 , HIS B:248 , MN B:400 , HOH B:700
BINDING SITE FOR RESIDUE MN B 401
13
BC4
SOFTWARE
ASP B:10 , ARG B:96 , LYS B:113 , TYR B:114 , CYS B:127 , SER B:129 , ILE B:130 , VAL B:195 , PRO B:196 , TRP B:206 , ASP B:220 , ARG B:221 , GLY B:222 , VAL B:223 , HIS B:248 , GLN B:249 , VAL B:250 , TYR B:272 , PHE B:276 , HOH B:527 , HOH B:534 , HOH B:569 , HOH B:588
BINDING SITE FOR RESIDUE E7B B 500
14
BC5
SOFTWARE
GLU B:252 , ASP B:277 , ASN B:278
BINDING SITE FOR RESIDUE AZI B 2
15
BC6
SOFTWARE
LEU B:47 , MET B:190 , ARG B:191
BINDING SITE FOR RESIDUE AZI B 501
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SER_THR_PHOSPHATASE (A:121-126,B:121-126)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SER_THR_PHOSPHATASE
PS00125
Serine/threonine specific protein phosphatases signature.
PP1A_HUMAN
121-126
2
A:121-126
B:121-126
[
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Exons
(7, 14)
Info
All Exons
Exon 1.3a (A:0-19 | B:0-19)
Exon 1.4d (A:19-63 | B:19-63)
Exon 1.4f (A:63-140 | B:63-140)
Exon 1.5a (A:140-175 | B:140-175)
Exon 1.6a (A:175-249 | B:175-249)
Exon 1.6d (A:250-294 | B:250-294)
Exon 1.7c (A:295-299 | B:295-299)
View:
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4d
3: Boundary 1.4d/1.4f
4: Boundary 1.4f/1.5a
5: Boundary 1.5a/1.6a
6: Boundary 1.6a/1.6d
7: Boundary 1.6d/1.7c
8: Boundary 1.7c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000376745
3a
ENSE00001471548
chr11:
67169402-67169199
204
PP1A_HUMAN
1-19
19
2
A:0-19
B:0-19
14
14
1.4d
ENST00000376745
4d
ENSE00001212206
chr11:
67168670-67168539
132
PP1A_HUMAN
19-63
45
2
A:19-63
B:19-63
45
45
1.4f
ENST00000376745
4f
ENSE00001741927
chr11:
67168390-67168160
231
PP1A_HUMAN
63-140
78
2
A:63-140
B:63-140
78
78
1.5a
ENST00000376745
5a
ENSE00001186176
chr11:
67167136-67167032
105
PP1A_HUMAN
140-175
36
2
A:140-175
B:140-175
36
36
1.6a
ENST00000376745
6a
ENSE00001186169
chr11:
67166634-67166411
224
PP1A_HUMAN
175-249
75
2
A:175-249
B:175-249
75
75
1.6d
ENST00000376745
6d
ENSE00001707059
chr11:
67166327-67166193
135
PP1A_HUMAN
250-294
45
2
A:250-294
B:250-294
45
45
1.7c
ENST00000376745
7c
ENSE00002183271
chr11:
67166116-67165672
445
PP1A_HUMAN
295-330
36
2
A:295-299
B:295-299
5
5
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3e7ba_ (A:)
1b: SCOP_d3e7bb_ (B:)
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Classes
(
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)
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Protein serine/threonine phosphatase
(50)
Protein domain
:
Protein phosphatase-1 (PP-1)
(15)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3e7ba_
A:
1b
d3e7bb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3e7bA00 (A:0-299)
1b: CATH_3e7bB00 (B:0-299)
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Topologies
(
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Human (Homo sapiens)
(36)
1a
3e7bA00
A:0-299
1b
3e7bB00
B:0-299
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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