PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3E76
Asym. Unit
Info
Asym.Unit (955 KB)
Biol.Unit 1 (935 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF WILD-TYPE GROEL WITH BOUND THALLIUM IONS
Authors
:
P. D. Kiser, G. H. Lorimer, K. Palczewski
Date
:
17 Aug 08 (Deposition) - 25 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.94
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Keywords
:
Groel, Hsp60, Chaperonin, Thallium, Atp-Binding, Chaperone, Nucleotide-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. D. Kiser, G. H. Lorimer, K. Palczewski
Use Of Thallium To Identify Monovalent Cation Binding Sites In Groel.
Acta Crystallogr. , Sect. F V. 65 967 2009
[
close entry info
]
Hetero Components
(3, 74)
Info
All Hetero Components
1a: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSa)
1b: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSb)
1c: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSc)
1d: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSd)
1e: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSe)
1f: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSf)
1g: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSg)
1h: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSh)
1i: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSi)
1j: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSj)
1k: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSk)
1l: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSl)
1m: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSm)
1n: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSn)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
3a: THALLIUM (I) ION (TLa)
3aa: THALLIUM (I) ION (TLaa)
3ab: THALLIUM (I) ION (TLab)
3ac: THALLIUM (I) ION (TLac)
3ad: THALLIUM (I) ION (TLad)
3ae: THALLIUM (I) ION (TLae)
3af: THALLIUM (I) ION (TLaf)
3ag: THALLIUM (I) ION (TLag)
3ah: THALLIUM (I) ION (TLah)
3ai: THALLIUM (I) ION (TLai)
3aj: THALLIUM (I) ION (TLaj)
3ak: THALLIUM (I) ION (TLak)
3al: THALLIUM (I) ION (TLal)
3am: THALLIUM (I) ION (TLam)
3an: THALLIUM (I) ION (TLan)
3ao: THALLIUM (I) ION (TLao)
3ap: THALLIUM (I) ION (TLap)
3aq: THALLIUM (I) ION (TLaq)
3ar: THALLIUM (I) ION (TLar)
3as: THALLIUM (I) ION (TLas)
3at: THALLIUM (I) ION (TLat)
3b: THALLIUM (I) ION (TLb)
3c: THALLIUM (I) ION (TLc)
3d: THALLIUM (I) ION (TLd)
3e: THALLIUM (I) ION (TLe)
3f: THALLIUM (I) ION (TLf)
3g: THALLIUM (I) ION (TLg)
3h: THALLIUM (I) ION (TLh)
3i: THALLIUM (I) ION (TLi)
3j: THALLIUM (I) ION (TLj)
3k: THALLIUM (I) ION (TLk)
3l: THALLIUM (I) ION (TLl)
3m: THALLIUM (I) ION (TLm)
3n: THALLIUM (I) ION (TLn)
3o: THALLIUM (I) ION (TLo)
3p: THALLIUM (I) ION (TLp)
3q: THALLIUM (I) ION (TLq)
3r: THALLIUM (I) ION (TLr)
3s: THALLIUM (I) ION (TLs)
3t: THALLIUM (I) ION (TLt)
3u: THALLIUM (I) ION (TLu)
3v: THALLIUM (I) ION (TLv)
3w: THALLIUM (I) ION (TLw)
3x: THALLIUM (I) ION (TLx)
3y: THALLIUM (I) ION (TLy)
3z: THALLIUM (I) ION (TLz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AGS
14
Ligand/Ion
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2
MG
14
Ligand/Ion
MAGNESIUM ION
3
TL
46
Ligand/Ion
THALLIUM (I) ION
[
close Hetero Component info
]
Sites
(74, 74)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:33 , ASP A:52 , GLY A:53 , VAL A:54 , ASP A:87 , GLY A:88 , THR A:89 , THR A:90 , THR A:91 , GLY A:414 , GLY A:415 , GLY A:416 , ASN A:479 , ALA A:480 , ILE A:493 , ASP A:495 , TL A:552 , MG A:553
BINDING SITE FOR RESIDUE AGS A 549
02
AC2
SOFTWARE
SER A:217 , PRO A:218 , GLN A:319
BINDING SITE FOR RESIDUE TL A 550
03
AC3
SOFTWARE
CYS A:458 , GLU A:483 , ASN B:112 , ASP B:115
BINDING SITE FOR RESIDUE TL A 551
04
AC4
SOFTWARE
THR A:30 , LYS A:51 , THR A:90 , AGS A:549
BINDING SITE FOR RESIDUE TL A 552
05
AC5
SOFTWARE
ASP A:87 , AGS A:549
BINDING SITE FOR RESIDUE MG A 553
06
AC6
SOFTWARE
THR B:30 , GLY B:32 , PRO B:33 , ASP B:52 , GLY B:53 , ASP B:87 , GLY B:88 , THR B:89 , THR B:90 , THR B:91 , GLY B:414 , GLY B:415 , TYR B:478 , ASN B:479 , ALA B:480 , ALA B:481 , ILE B:493 , ASP B:495 , TL B:551 , MG B:553
BINDING SITE FOR RESIDUE AGS B 549
07
AC7
SOFTWARE
CYS B:458 , GLU B:483 , ASN C:112
BINDING SITE FOR RESIDUE TL B 550
08
AC8
SOFTWARE
THR B:30 , LYS B:51 , THR B:90 , AGS B:549
BINDING SITE FOR RESIDUE TL B 551
09
AC9
SOFTWARE
SER B:217 , PRO B:218 , PHE B:219 , LYS B:245
BINDING SITE FOR RESIDUE TL B 552
10
BC1
SOFTWARE
ASP B:87 , AGS B:549
BINDING SITE FOR RESIDUE MG B 553
11
BC2
SOFTWARE
PRO C:33 , ASP C:87 , GLY C:88 , THR C:89 , THR C:90 , THR C:91 , GLY C:414 , GLY C:415 , GLY C:416 , TYR C:478 , ASN C:479 , ALA C:480 , ILE C:493 , ASP C:495 , TL C:551 , MG C:553
BINDING SITE FOR RESIDUE AGS C 549
12
BC3
SOFTWARE
CYS C:458 , GLU C:483 , ASN D:112
BINDING SITE FOR RESIDUE TL C 550
13
BC4
SOFTWARE
THR C:30 , LYS C:51 , THR C:90 , AGS C:549
BINDING SITE FOR RESIDUE TL C 551
14
BC5
SOFTWARE
SER C:217 , PRO C:218 , PHE C:219
BINDING SITE FOR RESIDUE TL C 552
15
BC6
SOFTWARE
ASP C:87 , AGS C:549
BINDING SITE FOR RESIDUE MG C 553
16
BC7
SOFTWARE
GLY D:32 , PRO D:33 , ASP D:87 , GLY D:88 , THR D:89 , THR D:90 , THR D:91 , GLY D:414 , GLY D:415 , TYR D:478 , ASN D:479 , ALA D:480 , ALA D:481 , ILE D:493 , ASP D:495 , TL D:552 , MG D:553
BINDING SITE FOR RESIDUE AGS D 549
17
BC8
SOFTWARE
SER D:217 , PRO D:218 , PHE D:219 , GLN D:319
BINDING SITE FOR RESIDUE TL D 550
18
BC9
SOFTWARE
CYS D:458 , GLU D:483 , ASN E:112 , ASP E:115
BINDING SITE FOR RESIDUE TL D 551
19
CC1
SOFTWARE
THR D:30 , LYS D:51 , THR D:90 , AGS D:549
BINDING SITE FOR RESIDUE TL D 552
20
CC2
SOFTWARE
ASP D:87 , AGS D:549
BINDING SITE FOR RESIDUE MG D 553
21
CC3
SOFTWARE
THR E:30 , GLY E:32 , PRO E:33 , ASP E:52 , GLY E:53 , ASP E:87 , GLY E:88 , THR E:89 , THR E:90 , THR E:91 , GLY E:414 , GLY E:415 , TYR E:478 , ASN E:479 , ALA E:480 , ALA E:481 , ILE E:493 , ASP E:495 , TL E:551 , MG E:553
BINDING SITE FOR RESIDUE AGS E 549
22
CC4
SOFTWARE
CYS E:458 , GLU E:483 , ASN F:112 , ASP F:115
BINDING SITE FOR RESIDUE TL E 550
23
CC5
SOFTWARE
THR E:30 , LYS E:51 , THR E:90 , AGS E:549
BINDING SITE FOR RESIDUE TL E 551
24
CC6
SOFTWARE
SER E:217 , PRO E:218 , PHE E:219
BINDING SITE FOR RESIDUE TL E 552
25
CC7
SOFTWARE
ASP E:87 , AGS E:549
BINDING SITE FOR RESIDUE MG E 553
26
CC8
SOFTWARE
THR F:30 , GLY F:32 , PRO F:33 , ASP F:52 , GLY F:53 , ASP F:87 , GLY F:88 , THR F:89 , THR F:90 , THR F:91 , GLY F:414 , GLY F:415 , TYR F:478 , ASN F:479 , ALA F:480 , ALA F:481 , ILE F:493 , ASP F:495 , TL F:552 , MG F:553
BINDING SITE FOR RESIDUE AGS F 549
27
CC9
SOFTWARE
SER F:217 , PRO F:218 , PHE F:219 , GLN F:319
BINDING SITE FOR RESIDUE TL F 550
28
DC1
SOFTWARE
CYS F:458 , GLU F:483 , ASN G:112
BINDING SITE FOR RESIDUE TL F 551
29
DC2
SOFTWARE
THR F:30 , LYS F:51 , THR F:90 , AGS F:549
BINDING SITE FOR RESIDUE TL F 552
30
DC3
SOFTWARE
ASP F:87 , AGS F:549
BINDING SITE FOR RESIDUE MG F 553
31
DC4
SOFTWARE
GLY G:32 , PRO G:33 , ASP G:87 , GLY G:88 , THR G:89 , THR G:90 , THR G:91 , GLY G:414 , GLY G:415 , GLY G:416 , TYR G:478 , ASN G:479 , ALA G:480 , ALA G:481 , ILE G:493 , ASP G:495 , TL G:552 , MG G:553
BINDING SITE FOR RESIDUE AGS G 549
32
DC5
SOFTWARE
SER G:217 , PRO G:218 , PHE G:219
BINDING SITE FOR RESIDUE TL G 550
33
DC6
SOFTWARE
ASN A:112 , CYS G:458 , GLU G:483
BINDING SITE FOR RESIDUE TL G 551
34
DC7
SOFTWARE
THR G:30 , LYS G:51 , THR G:90 , AGS G:549
BINDING SITE FOR RESIDUE TL G 552
35
DC8
SOFTWARE
ASP G:87 , AGS G:549
BINDING SITE FOR RESIDUE MG G 553
36
DC9
SOFTWARE
THR H:30 , GLY H:32 , PRO H:33 , ASP H:52 , GLY H:53 , ASP H:87 , GLY H:88 , THR H:89 , THR H:90 , THR H:91 , GLY H:414 , GLY H:415 , TYR H:478 , ASN H:479 , ALA H:480 , ALA H:481 , ILE H:493 , ASP H:495 , TL H:551 , MG H:553
BINDING SITE FOR RESIDUE AGS H 549
37
EC1
SOFTWARE
CYS H:458 , GLU H:483 , ASN I:112
BINDING SITE FOR RESIDUE TL H 550
38
EC2
SOFTWARE
THR H:30 , LYS H:51 , THR H:90 , AGS H:549
BINDING SITE FOR RESIDUE TL H 551
39
EC3
SOFTWARE
SER H:217 , PHE H:219 , GLN H:319
BINDING SITE FOR RESIDUE TL H 552
40
EC4
SOFTWARE
ASP H:87 , AGS H:549
BINDING SITE FOR RESIDUE MG H 553
41
EC5
SOFTWARE
GLY I:53 , VAL I:54 , ASP I:87 , GLY I:88 , THR I:89 , THR I:90 , THR I:91 , GLY I:414 , GLY I:415 , GLY I:416 , TYR I:478 , ASN I:479 , ALA I:480 , ILE I:493 , ASP I:495 , TL I:552 , MG I:553
BINDING SITE FOR RESIDUE AGS I 549
42
EC6
SOFTWARE
SER I:217 , PHE I:219 , GLN I:319
BINDING SITE FOR RESIDUE TL I 550
43
EC7
SOFTWARE
CYS I:458 , GLU I:483 , ASN J:112
BINDING SITE FOR RESIDUE TL I 551
44
EC8
SOFTWARE
THR I:30 , LYS I:51 , THR I:90 , AGS I:549
BINDING SITE FOR RESIDUE TL I 552
45
EC9
SOFTWARE
ASP I:87 , AGS I:549
BINDING SITE FOR RESIDUE MG I 553
46
FC1
SOFTWARE
THR J:30 , LEU J:31 , GLY J:32 , PRO J:33 , ASP J:52 , GLY J:53 , ASP J:87 , GLY J:88 , THR J:89 , THR J:90 , THR J:91 , GLY J:414 , GLY J:415 , TYR J:478 , ASN J:479 , ALA J:480 , ALA J:481 , ILE J:493 , ASP J:495 , TL J:552 , MG J:553
BINDING SITE FOR RESIDUE AGS J 549
47
FC2
SOFTWARE
SER J:217 , GLN J:319
BINDING SITE FOR RESIDUE TL J 550
48
FC3
SOFTWARE
CYS J:458 , GLU J:483 , ASN K:112 , ASP K:115
BINDING SITE FOR RESIDUE TL J 551
49
FC4
SOFTWARE
THR J:30 , LYS J:51 , THR J:90 , AGS J:549
BINDING SITE FOR RESIDUE TL J 552
50
FC5
SOFTWARE
ASP J:87 , AGS J:549
BINDING SITE FOR RESIDUE MG J 553
51
FC6
SOFTWARE
THR K:30 , LEU K:31 , GLY K:32 , PRO K:33 , ASP K:52 , GLY K:53 , VAL K:54 , ASP K:87 , GLY K:88 , THR K:89 , THR K:90 , THR K:91 , GLY K:414 , GLY K:415 , TYR K:478 , ASN K:479 , ALA K:480 , ALA K:481 , ILE K:493 , ASP K:495 , TL K:551 , MG K:553
BINDING SITE FOR RESIDUE AGS K 549
52
FC7
SOFTWARE
CYS K:458 , GLU K:483 , ASN L:112 , ASP L:115
BINDING SITE FOR RESIDUE TL K 550
53
FC8
SOFTWARE
THR K:30 , LYS K:51 , THR K:90 , AGS K:549
BINDING SITE FOR RESIDUE TL K 551
54
FC9
SOFTWARE
SER K:217 , PRO K:218 , GLN K:319
BINDING SITE FOR RESIDUE TL K 552
55
GC1
SOFTWARE
ASP K:87 , AGS K:549
BINDING SITE FOR RESIDUE MG K 553
56
GC2
SOFTWARE
THR L:30 , GLY L:32 , PRO L:33 , ASP L:52 , GLY L:53 , VAL L:54 , ASP L:87 , GLY L:88 , THR L:89 , THR L:90 , THR L:91 , GLY L:414 , GLY L:415 , TYR L:478 , ASN L:479 , ALA L:480 , ALA L:481 , ILE L:493 , ASP L:495 , TL L:552 , MG L:553
BINDING SITE FOR RESIDUE AGS L 549
57
GC3
SOFTWARE
SER L:217 , PRO L:218 , GLN L:319
BINDING SITE FOR RESIDUE TL L 550
58
GC4
SOFTWARE
CYS L:458 , GLU L:483 , ASN M:112
BINDING SITE FOR RESIDUE TL L 551
59
GC5
SOFTWARE
THR L:30 , LYS L:51 , THR L:90 , AGS L:549
BINDING SITE FOR RESIDUE TL L 552
60
GC6
SOFTWARE
ASP L:87 , AGS L:549
BINDING SITE FOR RESIDUE MG L 553
61
GC7
SOFTWARE
THR M:30 , GLY M:32 , PRO M:33 , ASP M:52 , GLY M:53 , VAL M:54 , ASP M:87 , GLY M:88 , THR M:89 , THR M:90 , THR M:91 , GLY M:414 , GLY M:415 , ASN M:479 , ALA M:480 , ALA M:481 , ILE M:493 , ASP M:495 , TL M:551 , MG M:553
BINDING SITE FOR RESIDUE AGS M 549
62
GC8
SOFTWARE
CYS M:458 , GLU M:483 , ASN N:112
BINDING SITE FOR RESIDUE TL M 550
63
GC9
SOFTWARE
THR M:30 , LYS M:51 , THR M:90 , AGS M:549
BINDING SITE FOR RESIDUE TL M 551
64
HC1
SOFTWARE
SER M:217
BINDING SITE FOR RESIDUE TL M 552
65
HC2
SOFTWARE
ASP M:87 , AGS M:549
BINDING SITE FOR RESIDUE MG M 553
66
HC3
SOFTWARE
THR N:30 , GLY N:32 , PRO N:33 , ASP N:52 , ASP N:87 , GLY N:88 , THR N:89 , THR N:90 , THR N:91 , GLY N:414 , GLY N:415 , GLY N:416 , TYR N:478 , ASN N:479 , ALA N:480 , ALA N:481 , ILE N:493 , ASP N:495 , TL N:550 , MG N:552
BINDING SITE FOR RESIDUE AGS N 549
67
HC4
SOFTWARE
ASN H:112 , ASP H:115 , CYS N:458 , GLU N:483
BINDING SITE FOR RESIDUE TL H 554
68
HC5
SOFTWARE
THR N:30 , LYS N:51 , AGS N:549
BINDING SITE FOR RESIDUE TL N 550
69
HC6
SOFTWARE
SER N:217 , PRO N:218 , PHE N:219 , GLN N:319
BINDING SITE FOR RESIDUE TL N 551
70
HC7
SOFTWARE
ASP N:87 , AGS N:549
BINDING SITE FOR RESIDUE MG N 552
71
HC8
SOFTWARE
LYS A:132 , ALA A:133 , SER A:135 , TL A:554 , LYS D:132 , SER D:135
BINDING SITE FOR RESIDUE TL D 1
72
HC9
SOFTWARE
LYS B:132 , ALA B:133 , SER B:135 , TL B:554 , ALA F:133
BINDING SITE FOR RESIDUE TL F 554
73
IC1
SOFTWARE
LYS B:132 , SER B:135 , ALA F:133 , TL F:554
BINDING SITE FOR RESIDUE TL B 554
74
IC2
SOFTWARE
LYS A:132 , SER A:135 , TL D:1 , LYS D:132 , ALA D:133 , SER D:135
BINDING SITE FOR RESIDUE TL A 554
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 14)
Info
All PROSITE Patterns/Profiles
1: CHAPERONINS_CPN60 (A:405-416,B:405-416,C:405-416,D:40...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHAPERONINS_CPN60
PS00296
Chaperonins cpn60 signature.
CH60_ECOUT
405-416
14
A:405-416
B:405-416
C:405-416
D:405-416
E:405-416
F:405-416
G:405-416
H:405-416
I:405-416
J:405-416
K:405-416
L:405-416
M:405-416
N:405-416
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (955 KB)
Header - Asym.Unit
Biol.Unit 1 (935 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3E76
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help