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3E5A
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AURORA A IN COMPLEX WITH VX-680 AND TPX2
Authors
:
B. Zhao, A. Smallwood, Z. Lai
Date
:
13 Aug 08 (Deposition) - 28 Oct 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Aurora A, Serine/Threonine-Protein Kinase, Cofactor, Tpx2, Vx-680, Inhibitor, Phosphorylation, Atp-Binding, Cell Cycle, Nucleotide- Binding, Phosphoprotein, Transferase, Nucleus
(Keyword Search:
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Reference
:
B. Zhao, A. Smallwood, J. Yang, K. Koretke, K. Nurse, A. Calamari, R. B. Kirkpatrick, Z. Lai
Modulation Of Kinase-Inhibitor Interactions By Auxiliary Protein Binding: Crystallography Studies On Aurora A Interactions With Vx-680 And With Tpx2.
Protein Sci. V. 17 1791 2008
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
2a: PHOSPHOTHREONINE (TPOa)
3a: CYCLOPROPANECARBOXYLIC ACID {4-[4-... (VX6a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
1
Ligand/Ion
SULFATE ION
2
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
3
VX6
1
Ligand/Ion
CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:33 , HOH A:36 , LEU A:139 , PHE A:144 , ALA A:160 , GLU A:211 , TYR A:212 , ALA A:213 , PRO A:214 , GLY A:216 , THR A:217 , LYS A:224 , LEU A:263 , ALA A:273 , ASP A:274
BINDING SITE FOR RESIDUE VX6 A 500
2
AC2
SOFTWARE
HOH A:52 , SER A:245 , MET A:373 , LEU A:374 , ARG A:375
BINDING SITE FOR RESIDUE SO4 A 600
[
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041128 (S155R, chain A, )
2: VAR_041129 (V174M, chain A, )
3: VAR_041130 (M373V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041128
S
155
R
AURKA_HUMAN
Unclassified
---
A
S
155
R
2
UniProt
VAR_041129
V
174
M
AURKA_HUMAN
Unclassified
---
A
V
174
M
3
UniProt
VAR_041130
M
373
V
AURKA_HUMAN
Polymorphism
33923703
A
M
373
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:139-162)
2: PROTEIN_KINASE_ST (A:252-264)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
AURKA_HUMAN
139-162
1
A:139-162
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
AURKA_HUMAN
252-264
1
A:252-264
[
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Exons
(8, 8)
Info
All Exons
Exon 1.3 (B:6-36 (gaps))
Exon 1.4 (B:36-42)
Exon 2.7 (A:125-125)
Exon 2.8b (A:125-189)
Exon 2.9 (A:189-235)
Exon 2.10b (A:236-285)
Exon 2.11a (A:285-343)
Exon 2.11c (A:344-389)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 2.6b/2.7
05: Boundary 2.7/2.8b
06: Boundary 2.8b/2.9
07: Boundary 2.9/2.10b
08: Boundary 2.10b/2.11a
09: Boundary 2.11a/2.11c
10: Boundary 2.11c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000300403
1
ENSE00001563522
chr20:
30327074-30327424
351
TPX2_HUMAN
-
0
0
-
-
1.2
ENST00000300403
2
ENSE00001388212
chr20:
30330344-30330450
107
TPX2_HUMAN
-
0
0
-
-
1.3
ENST00000300403
3
ENSE00000859866
chr20:
30345210-30345385
176
TPX2_HUMAN
1-36
36
1
B:6-36 (gaps)
31
1.4
ENST00000300403
4
ENSE00000560794
chr20:
30347860-30347982
123
TPX2_HUMAN
36-77
42
1
B:36-42
7
1.5
ENST00000300403
5
ENSE00000661090
chr20:
30354359-30354485
127
TPX2_HUMAN
77-119
43
0
-
-
1.6
ENST00000300403
6
ENSE00000661091
chr20:
30358146-30358274
129
TPX2_HUMAN
119-162
44
0
-
-
1.7
ENST00000300403
7
ENSE00000661092
chr20:
30359363-30359485
123
TPX2_HUMAN
162-203
42
0
-
-
1.8
ENST00000300403
8
ENSE00000661094
chr20:
30363670-30363791
122
TPX2_HUMAN
203-244
42
0
-
-
1.9
ENST00000300403
9
ENSE00000661095
chr20:
30365290-30365441
152
TPX2_HUMAN
244-294
51
0
-
-
1.10
ENST00000300403
10
ENSE00000560800
chr20:
30366616-30366787
172
TPX2_HUMAN
295-352
58
0
-
-
1.12
ENST00000300403
12
ENSE00000661097
chr20:
30370052-30370193
142
TPX2_HUMAN
352-399
48
0
-
-
1.13
ENST00000300403
13
ENSE00000661098
chr20:
30371508-30371724
217
TPX2_HUMAN
399-471
73
0
-
-
1.14
ENST00000300403
14
ENSE00000661099
chr20:
30380538-30380633
96
TPX2_HUMAN
472-503
32
0
-
-
1.15
ENST00000300403
15
ENSE00000661100
chr20:
30381651-30381827
177
TPX2_HUMAN
504-562
59
0
-
-
1.16
ENST00000300403
16
ENSE00000661101
chr20:
30382205-30382351
147
TPX2_HUMAN
563-611
49
0
-
-
1.17
ENST00000300403
17
ENSE00000661102
chr20:
30385207-30385318
112
TPX2_HUMAN
612-649
38
0
-
-
1.18
ENST00000300403
18
ENSE00000560807
chr20:
30386168-30386355
188
TPX2_HUMAN
649-711
63
0
-
-
1.19
ENST00000300403
19
ENSE00001180996
chr20:
30388773-30389608
836
TPX2_HUMAN
712-747
36
0
-
-
2.1b
ENST00000395915
1b
ENSE00001935829
chr20:
54967352-54967224
129
AURKA_HUMAN
-
0
0
-
-
2.5b
ENST00000395915
5b
ENSE00000845695
chr20:
54963258-54963212
47
AURKA_HUMAN
1-14
14
0
-
-
2.6b
ENST00000395915
6b
ENSE00002179826
chr20:
54961589-54961313
277
AURKA_HUMAN
15-107
93
0
-
-
2.7
ENST00000395915
7
ENSE00000991660
chr20:
54959380-54959326
55
AURKA_HUMAN
107-125
19
1
A:125-125
1
2.8b
ENST00000395915
8b
ENSE00002188846
chr20:
54958232-54958041
192
AURKA_HUMAN
125-189
65
1
A:125-189
65
2.9
ENST00000395915
9
ENSE00000512389
chr20:
54956627-54956489
139
AURKA_HUMAN
189-235
47
1
A:189-235
47
2.10b
ENST00000395915
10b
ENSE00000662874
chr20:
54948612-54948464
149
AURKA_HUMAN
236-285
50
1
A:236-285
50
2.11a
ENST00000395915
11a
ENSE00000512391
chr20:
54945715-54945541
175
AURKA_HUMAN
285-343
59
1
A:285-343
59
2.11c
ENST00000395915
11c
ENSE00001257584
chr20:
54945396-54944446
951
AURKA_HUMAN
344-403
60
1
A:344-389
46
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3e5aa_ (A:)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Aurora-related kinase 1 (aurora-2)
(39)
Human (Homo sapiens) [TaxId: 9606]
(39)
1a
d3e5aa_
A:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3e5aA01 (A:128-216)
2a: CATH_3e5aA02 (A:217-387)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Homo sapiens. Organism_taxid: 9606.
(16)
1a
3e5aA01
A:128-216
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Homo sapiens. Organism_taxid: 9606.
(16)
2a
3e5aA02
A:217-387
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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