PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3E3I
Biol. Unit 3
Info
Asym.Unit (428 KB)
Biol.Unit 1 (144 KB)
Biol.Unit 2 (145 KB)
Biol.Unit 3 (142 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
H. INFLUENZAE BETA-CARBONIC ANHYDRASE, VARIANT G41A WITH 100 MM BICARBONATE
Authors
:
R. S. Rowlett, H. Failing
Date
:
07 Aug 08 (Deposition) - 18 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Keywords
:
Beta Carbonic Anhydrase, Allosteric Site Mutant, Lyase, Metal-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. S. Rowlett, K. M. Hoffmann, H. Failing, M. M. Mysliwiec, D. Samardzi
Evidence For A Bicarbonate "Escort" Site In Haemophilus Influenzae Beta-Carbonic Anhydrase .
Biochemistry V. 49 3640 2010
[
close entry info
]
Hetero Components
(2, 8)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
1b: BICARBONATE ION (BCTb)
1c: BICARBONATE ION (BCTc)
1d: BICARBONATE ION (BCTd)
1e: BICARBONATE ION (BCTe)
1f: BICARBONATE ION (BCTf)
1g: BICARBONATE ION (BCTg)
1h: BICARBONATE ION (BCTh)
1i: BICARBONATE ION (BCTi)
1j: BICARBONATE ION (BCTj)
1k: BICARBONATE ION (BCTk)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCT
4
Ligand/Ion
BICARBONATE ION
2
SO4
4
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: CC7 (SOFTWARE)
02: CC8 (SOFTWARE)
03: CC9 (SOFTWARE)
04: DC1 (SOFTWARE)
05: DC2 (SOFTWARE)
06: DC3 (SOFTWARE)
07: DC4 (SOFTWARE)
08: DC5 (SOFTWARE)
09: DC6 (SOFTWARE)
10: DC7 (SOFTWARE)
11: DC8 (SOFTWARE)
12: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC7
SOFTWARE
CYS I:42 , ASP I:44 , HIS I:98 , CYS I:101
BINDING SITE FOR RESIDUE ZN I 230
02
CC8
SOFTWARE
ARG I:160 , ARG I:198 , HOH I:270 , HOH I:275 , ARG J:124
BINDING SITE FOR RESIDUE SO4 I 231
03
CC9
SOFTWARE
TRP I:39 , ALA I:41 , VAL I:47 , ALA I:49 , ARG I:64 , TYR I:181 , HOH I:240 , HOH I:249
BINDING SITE FOR RESIDUE BCT I 232
04
DC1
SOFTWARE
CYS J:42 , ASP J:44 , HIS J:98 , CYS J:101
BINDING SITE FOR RESIDUE ZN J 230
05
DC2
SOFTWARE
LEU I:121 , ARG I:124 , ARG J:160 , LYS J:165 , ARG J:198
BINDING SITE FOR RESIDUE SO4 J 231
06
DC3
SOFTWARE
TRP J:39 , ALA J:41 , VAL J:47 , PRO J:48 , ALA J:49 , LEU J:52 , ARG J:64 , TYR J:181 , HOH J:256
BINDING SITE FOR RESIDUE BCT J 232
07
DC4
SOFTWARE
CYS K:42 , ASP K:44 , HIS K:98 , CYS K:101
BINDING SITE FOR RESIDUE ZN K 230
08
DC5
SOFTWARE
LEU K:121 , ARG K:124 , ARG L:160 , ARG L:198
BINDING SITE FOR RESIDUE SO4 K 231
09
DC6
SOFTWARE
TRP K:39 , ALA K:41 , VAL K:47 , ALA K:49 , ARG K:64 , TYR K:181 , HOH K:236 , HOH K:247
BINDING SITE FOR RESIDUE BCT K 232
10
DC7
SOFTWARE
CYS L:42 , ASP L:44 , HIS L:98 , CYS L:101
BINDING SITE FOR RESIDUE ZN L 230
11
DC8
SOFTWARE
ARG K:160 , LYS K:165 , ARG K:198 , LEU L:121 , ARG L:124 , HOH L:258
BINDING SITE FOR RESIDUE SO4 L 231
12
DC9
SOFTWARE
TRP L:39 , ALA L:41 , VAL L:47 , PRO L:48 , ALA L:49 , ARG L:64 , TYR L:181 , HOH L:237 , HOH L:245
BINDING SITE FOR RESIDUE BCT L 232
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: PROK_CO2_ANHYDRASE_1 (I:42-49,J:42-49,K:42-49,L:42-49)
2: PROK_CO2_ANHYDRASE_2 (I:82-102,J:82-102,K:82-102,L:82-10...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROK_CO2_ANHYDRASE_1
PS00704
Prokaryotic-type carbonic anhydrases signature 1.
CAN_HAEIN
42-49
4
-
-
-
-
-
-
-
-
I:42-49
J:42-49
K:42-49
L:42-49
2
PROK_CO2_ANHYDRASE_2
PS00705
Prokaryotic-type carbonic anhydrases signature 2.
CAN_HAEIN
82-102
4
-
-
-
-
-
-
-
-
I:82-102
J:82-102
K:82-102
L:82-102
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d3e3ia_ (A:)
1b: SCOP_d3e3ib_ (B:)
1c: SCOP_d3e3ik_ (K:)
1d: SCOP_d3e3il_ (L:)
1e: SCOP_d3e3ic_ (C:)
1f: SCOP_d3e3id_ (D:)
1g: SCOP_d3e3ie_ (E:)
1h: SCOP_d3e3if_ (F:)
1i: SCOP_d3e3ig_ (G:)
1j: SCOP_d3e3ih_ (H:)
1k: SCOP_d3e3ii_ (I:)
1l: SCOP_d3e3ij_ (J:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Resolvase-like
(37)
Superfamily
:
beta-carbonic anhydrase, cab
(26)
Family
:
beta-carbonic anhydrase, cab
(22)
Protein domain
:
automated matches
(16)
Haemophilus influenzae [TaxId: 727]
(14)
1a
d3e3ia_
A:
1b
d3e3ib_
B:
1c
d3e3ik_
K:
1d
d3e3il_
L:
1e
d3e3ic_
C:
1f
d3e3id_
D:
1g
d3e3ie_
E:
1h
d3e3if_
F:
1i
d3e3ig_
G:
1j
d3e3ih_
H:
1k
d3e3ii_
I:
1l
d3e3ij_
J:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_3e3iJ00 (J:1-215)
1b: CATH_3e3iL00 (L:1-216)
1c: CATH_3e3iD00 (D:1-220)
1d: CATH_3e3iG00 (G:1-221)
1e: CATH_3e3iA00 (A:1-220)
1f: CATH_3e3iC00 (C:1-220)
1g: CATH_3e3iF00 (F:1-215)
1h: CATH_3e3iH00 (H:1-219)
1i: CATH_3e3iK00 (K:1-219)
1j: CATH_3e3iI00 (I:1-220)
1k: CATH_3e3iB00 (B:1-219)
1l: CATH_3e3iE00 (E:1-219)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-carbonic Anhydrase; Chain A
(20)
Homologous Superfamily
:
Beta-carbonic Anhydrase; Chain A
(20)
Haemophilus influenzae. Organism_taxid: 727.
(13)
1a
3e3iJ00
J:1-215
1b
3e3iL00
L:1-216
1c
3e3iD00
D:1-220
1d
3e3iG00
G:1-221
1e
3e3iA00
A:1-220
1f
3e3iC00
C:1-220
1g
3e3iF00
F:1-215
1h
3e3iH00
H:1-219
1i
3e3iK00
K:1-219
1j
3e3iI00
I:1-220
1k
3e3iB00
B:1-219
1l
3e3iE00
E:1-219
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (428 KB)
Header - Asym.Unit
Biol.Unit 1 (144 KB)
Header - Biol.Unit 1
Biol.Unit 2 (145 KB)
Header - Biol.Unit 2
Biol.Unit 3 (142 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3E3I
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help