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3E37
Asym. Unit
Info
Asym.Unit (141 KB)
Biol.Unit 1 (136 KB)
Biol.Unit 2 (63 KB)
Biol.Unit 3 (77 KB)
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(1)
Title
:
PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH BISUBSTRATE ETHYLENEDIAMINE SCAFFOLD INHIBITOR 5
Authors
:
M. A. Hast, L. S. Beese
Date
:
06 Aug 08 (Deposition) - 10 Mar 09 (Release) - 10 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Ftase, Farnesyltransferase, Protein Farnesyltransferase, Malaria, Plasmodium, Falciparum, Ethylenediamine, Prenyltransferase, Transferase, Metal-Binding, Phosphoprotein, Zinc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Hast, S. Fletcher, C. G. Cummings, E. E. Pusateri, M. A. Blaskovich, K. Rivas, M. H. Gelb, W. C. Van Voorhis, S. M. Sebti, A. D. Hamilton, L. S. Beese
Structural Basis For Binding And Selectivity Of Antimalarial And Anticancer Ethylenediamine Inhibitors To Protein Farnesyltransferase.
Chem. Biol. V. 16 181 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: TERT-BUTYL 4-({(2-{(4-CYANOPHENYL)... (ED5a)
2a: SUCROSE (SUCa)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ED5
1
Ligand/Ion
TERT-BUTYL 4-({(2-{(4-CYANOPHENYL)[(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]AMINO}ETHYL)[(2-METHYLPHENYL)SULFONYL]AMINO}METHYL)PIPERIDINE-1-CARBOXYLATE
2
SUC
1
Ligand/Ion
SUCROSE
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:299 , CYS B:301 , HIS B:364
BINDING SITE FOR RESIDUE ZN B 1001
2
AC2
SOFTWARE
TYR A:166 , TRP B:104 , TYR B:156 , ARG B:204 , CYS B:208 , GLY B:252 , CYS B:256 , ASP B:299 , CYS B:301 , TRP B:305 , TYR B:363 , HIS B:364 , HOH B:6255 , HOH B:7709 , HOH B:7774 , HOH B:8037
BINDING SITE FOR RESIDUE ED5 B 1
3
AC3
SOFTWARE
TYR A:241 , GLN A:285 , ASP A:286 , ALA B:232 , ARG B:233 , GLN B:235 , ASN B:236 , TRP B:237 , GLY B:239 , ASN B:271 , SER B:274 , HOH B:2811 , HOH B:6411 , HOH B:7644 , HOH B:7696 , HOH B:7857 , HOH B:7938 , HOH B:8071
BINDING SITE FOR RESIDUE SUC B 1002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: PFTA (A:112-146|A:181-215|A:147-180|A:21...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PFTA
PS51147
Protein prenyltransferases alpha subunit repeat profile.
FNTA_HUMAN
112-146
181-215
147-180
216-249
255-289
5
A:112-146
A:181-215
A:147-180
A:216-249
A:255-289
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Exons
(9, 9)
Info
All Exons
Exon 1.2a (A:55-67)
Exon 1.4b (A:67-96)
Exon 1.5 (A:96-134)
Exon 1.6b (A:134-169)
Exon 1.8 (A:169-211)
Exon 1.9d (A:212-261)
Exon 1.9g (A:261-282)
Exon 1.10d (A:282-339)
Exon 1.11e (A:340-369)
View:
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All Exon Boundaries
01: Boundary -/1.2a
02: Boundary 1.2a/1.4b
03: Boundary 1.4b/1.5
04: Boundary 1.5/1.6b
05: Boundary 1.6b/1.8
06: Boundary 1.8/1.9d
07: Boundary 1.9d/1.9g
08: Boundary 1.9g/1.10d
09: Boundary 1.10d/1.11e
10: Boundary 1.11e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000302279
2a
ENSE00002156549
chr8:
42911296-42911689
394
FNTA_HUMAN
1-67
67
1
A:55-67
13
1.4b
ENST00000302279
4b
ENSE00002201932
chr8:
42914235-42914320
86
FNTA_HUMAN
67-96
30
1
A:67-96
30
1.5
ENST00000302279
5
ENSE00002175026
chr8:
42919244-42919358
115
FNTA_HUMAN
96-134
39
1
A:96-134
39
1.6b
ENST00000302279
6b
ENSE00002167598
chr8:
42924698-42924802
105
FNTA_HUMAN
134-169
36
1
A:134-169
36
1.8
ENST00000302279
8
ENSE00002186091
chr8:
42927324-42927450
127
FNTA_HUMAN
169-211
43
1
A:169-211
43
1.9d
ENST00000302279
9d
ENSE00001191775
chr8:
42932359-42932507
149
FNTA_HUMAN
212-261
50
1
A:212-261
50
1.9g
ENST00000302279
9g
ENSE00001127401
chr8:
42938261-42938323
63
FNTA_HUMAN
261-282
22
1
A:261-282
22
1.10d
ENST00000302279
10d
ENSE00001127397
chr8:
42939853-42940024
172
FNTA_HUMAN
282-339
58
1
A:282-339
58
1.11e
ENST00000302279
11e
ENSE00002179236
chr8:
42940303-42940931
629
FNTA_HUMAN
340-379
40
1
A:340-369
30
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3e37a_ (A:)
2a: SCOP_d3e37b_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Protein prenylyltransferase
(68)
Family
:
Protein prenylyltransferase
(68)
Protein domain
:
Protein farnesyltransferase alpha-subunit
(64)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d3e37a_
A:
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Protein prenyltransferases
(86)
Protein domain
:
Protein farnesyltransferase, beta-subunit
(63)
Human (Homo sapiens) [TaxId: 9606]
(13)
2a
d3e37b_
B:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3e37A00 (A:55-369)
2a: CATH_3e37B00 (B:17-426)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.120, no name defined]
(62)
Human (Homo sapiens)
(14)
1a
3e37A00
A:55-369
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.20, no name defined]
(105)
Human (Homo sapiens)
(23)
2a
3e37B00
B:17-426
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (136 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
Biol.Unit 3 (77 KB)
Header - Biol.Unit 3
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