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3E22
Asym. Unit
Info
Asym.Unit (282 KB)
Biol.Unit 1 (271 KB)
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(1)
Title
:
TUBULIN-COLCHICINE-SOBLIDOTIN: STATHMIN-LIKE DOMAIN COMPLEX
Authors
:
A. Cormier, M. Marchand, R. B. Ravelli, M. Knossow, B. Gigant
Date
:
05 Aug 08 (Deposition) - 21 Oct 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.80
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Alpha-Tubulin, Beta-Tubulin, Colchicine, Gtpase, Microtubule, Soblidotin, Stathmin, Tubulin, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Cormier, M. Marchand, R. B. Ravelli, M. Knossow, B. Gigant
Structural Insight Into The Inhibition Of Tubulin By Vinca Domain Peptide Ligands
Embo Rep. V. 9 1101 2008
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
3a: N-[(7S)-1,2,3,10-TETRAMETHOXY-9-OX... (LOCa)
3b: N-[(7S)-1,2,3,10-TETRAMETHOXY-9-OX... (LOCb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: SOBLIDOTIN (TZTa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
LOC
2
Ligand/Ion
N-[(7S)-1,2,3,10-TETRAMETHOXY-9-OXO-6,7-DIHYDRO-5H-BENZO[D]HEPTALEN-7-YL]ETHANAMIDE
4
MG
2
Ligand/Ion
MAGNESIUM ION
5
TZT
1
Ligand/Ion
SOBLIDOTIN
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:11 , ALA A:12 , GLN A:15 , ILE A:16 , ASP A:69 , GLU A:71 , ASP A:98 , SER A:140 , GLY A:142 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , ILE A:171 , PRO A:173 , SER A:178 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , LYS B:254
BINDING SITE FOR RESIDUE GTP A 600
2
AC2
SOFTWARE
ASP A:98 , ASN A:101 , GLY A:144 , THR A:145
BINDING SITE FOR RESIDUE MG A 601
3
AC3
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , ASN B:101 , SER B:140 , GLY B:144 , THR B:145 , GLY B:146 , PRO B:173 , SER B:178 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228
BINDING SITE FOR RESIDUE GDP B 600
4
AC4
SOFTWARE
SER A:178 , THR A:179 , ALA A:180 , THR B:239 , CYS B:241 , LEU B:242 , LEU B:248 , ALA B:250 , LYS B:254 , LEU B:255 , ASN B:258 , ALA B:316 , ASN B:350 , LYS B:352
BINDING SITE FOR RESIDUE LOC B 700
5
AC5
SOFTWARE
GLN B:11 , GLN B:15 , THR B:74 , SER B:178 , ASP B:179 , PRO B:222 , THR B:223 , TYR B:224 , GLY B:225 , PRO C:325 , ASN C:329 , PHE C:351
BINDING SITE FOR RESIDUE TZT B 800
6
AC6
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ILE C:16 , ASP C:69 , GLU C:71 , ASP C:98 , SER C:140 , GLY C:142 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , ILE C:171 , PRO C:173 , SER C:178 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , LYS D:254
BINDING SITE FOR RESIDUE GTP C 600
7
AC7
SOFTWARE
ASP C:98 , ASN C:101 , GLY C:144 , THR C:145
BINDING SITE FOR RESIDUE MG C 601
8
AC8
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , ASN D:101 , SER D:140 , GLY D:142 , GLY D:144 , THR D:145 , GLY D:146 , SER D:178 , ASP D:179 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228
BINDING SITE FOR RESIDUE GDP D 600
9
AC9
SOFTWARE
THR C:179 , ALA C:180 , THR D:239 , CYS D:241 , LEU D:242 , LEU D:248 , ALA D:250 , LYS D:254 , LEU D:255 , ASN D:258 , ALA D:316 , ASN D:350 , LYS D:352
BINDING SITE FOR RESIDUE LOC D 700
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 7)
Info
All PROSITE Patterns/Profiles
1: STATHMIN_3 (E:5-141)
2: STATHMIN_1 (E:45-49)
3: STATHMIN_2 (E:73-82)
4: TUBULIN (B:142-148,D:142-148,A:142-148,C:14...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
STATHMIN_3
PS51663
Stathmin-like (SLD) domain profile.
STMN4_RAT
48-189
1
E:5-141
2
STATHMIN_1
PS00563
Stathmin family signature 1.
STMN4_RAT
84-93
1
E:45-49
3
STATHMIN_2
PS01041
Stathmin family signature 2.
STMN4_RAT
117-126
1
E:73-82
4
TUBULIN
PS00227
Tubulin subunits alpha, beta, and gamma signature.
TBB2B_BOVIN
140-146
2
B:142-148
D:142-148
TBA1C_BOVIN
142-148
2
A:142-148
C:142-148
[
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Exons
(4, 8)
Info
All Exons
Exon 1.1 (B:2-19 | D:2-19)
Exon 1.2 (B:20-58 (gaps) | D:20-58 (gaps))
Exon 1.3 (B:58-95 | D:58-95)
Exon 1.4 (B:95-438 (gaps) | D:95-438 (gaps))
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000005346
1
ENSBTAE00000067590
chr23:
51448815-51448966
152
TBB2B_BOVIN
1-19
19
2
B:2-19
D:2-19
18
18
1.2
ENSBTAT00000005346
2
ENSBTAE00000380542
chr23:
51449714-51449822
109
TBB2B_BOVIN
20-56
37
2
B:20-58 (gaps)
D:20-58 (gaps)
39
39
1.3
ENSBTAT00000005346
3
ENSBTAE00000419208
chr23:
51450093-51450203
111
TBB2B_BOVIN
56-93
38
2
B:58-95
D:58-95
38
38
1.4
ENSBTAT00000005346
4
ENSBTAE00000067601
chr23:
51450543-51451603
1061
TBB2B_BOVIN
93-445
353
2
B:95-438 (gaps)
D:95-438 (gaps)
344
344
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3e22e1 (E:4-141)
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Protein Domains
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Stathmin
(21)
Family
:
Stathmin
(21)
Protein domain
:
Stathmin 4
(21)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(21)
1a
d3e22e1
E:4-141
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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show SS bonds with a radius of 100 units (=0.4Å)
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