PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3E1M
Asym. Unit
Info
Asym.Unit (340 KB)
Biol.Unit 1 (641 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI BACTERIOFERRITIN (BFR) OBTAINED AFTER SOAKING APO-BFR CRYSTALS FOR 2.5 MINUTES IN FE2+ (2.5M FE(II)-BFR)
Authors
:
A. Crow, T. Lawson, A. Lewin, G. R. Moore, N. Le Brun
Date
:
04 Aug 08 (Deposition) - 05 May 09 (Release) - 26 May 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (2x)
Keywords
:
Bacterioferritin. Rhombic Dodecahedral Superstructure. , Heme, Iron, Iron Storage, Metal-Binding, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Crow, T. L. Lawson, A. Lewin, G. R. Moore, N. E. Le Brun
Structural Basis For Iron Mineralization By Bacterioferritin
J. Am. Chem. Soc. V. 131 6808 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 58)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
1aa: FE (II) ION (FE2aa)
1ab: FE (II) ION (FE2ab)
1ac: FE (II) ION (FE2ac)
1ad: FE (II) ION (FE2ad)
1ae: FE (II) ION (FE2ae)
1af: FE (II) ION (FE2af)
1ag: FE (II) ION (FE2ag)
1ah: FE (II) ION (FE2ah)
1ai: FE (II) ION (FE2ai)
1aj: FE (II) ION (FE2aj)
1b: FE (II) ION (FE2b)
1c: FE (II) ION (FE2c)
1d: FE (II) ION (FE2d)
1e: FE (II) ION (FE2e)
1f: FE (II) ION (FE2f)
1g: FE (II) ION (FE2g)
1h: FE (II) ION (FE2h)
1i: FE (II) ION (FE2i)
1j: FE (II) ION (FE2j)
1k: FE (II) ION (FE2k)
1l: FE (II) ION (FE2l)
1m: FE (II) ION (FE2m)
1n: FE (II) ION (FE2n)
1o: FE (II) ION (FE2o)
1p: FE (II) ION (FE2p)
1q: FE (II) ION (FE2q)
1r: FE (II) ION (FE2r)
1s: FE (II) ION (FE2s)
1t: FE (II) ION (FE2t)
1u: FE (II) ION (FE2u)
1v: FE (II) ION (FE2v)
1w: FE (II) ION (FE2w)
1x: FE (II) ION (FE2x)
1y: FE (II) ION (FE2y)
1z: FE (II) ION (FE2z)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE2
36
Ligand/Ion
FE (II) ION
2
HEM
6
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
SO4
16
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(58, 58)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:145 , LEU A:146 , GLN A:147 , HOH A:405
BINDING SITE FOR RESIDUE SO4 A 250
02
AC2
SOFTWARE
GLU A:18 , GLU A:51 , HIS A:54 , GLU A:127
BINDING SITE FOR RESIDUE FE2 A 300
03
AC3
SOFTWARE
GLU A:51 , GLU A:94 , GLU A:127 , HIS A:130 , HOH A:413
BINDING SITE FOR RESIDUE FE2 A 301
04
AC4
SOFTWARE
HIS A:46 , ASP A:50
BINDING SITE FOR RESIDUE FE2 A 400
05
AC5
SOFTWARE
ARG A:117 , ARG D:117 , ARG J:117
BINDING SITE FOR RESIDUE SO4 A 401
06
AC6
SOFTWARE
GLY B:145 , LEU B:146 , GLN B:147 , HOH B:410
BINDING SITE FOR RESIDUE SO4 B 250
07
AC7
SOFTWARE
GLU B:18 , GLU B:51 , HIS B:54 , GLU B:127 , FE2 B:301
BINDING SITE FOR RESIDUE FE2 B 300
08
AC8
SOFTWARE
GLU B:51 , GLU B:94 , GLU B:127 , HIS B:130 , FE2 B:300
BINDING SITE FOR RESIDUE FE2 B 301
09
AC9
SOFTWARE
HIS B:46 , ASP B:50
BINDING SITE FOR RESIDUE FE2 B 400
10
BC1
SOFTWARE
ARG B:117 , ARG C:117 , ARG H:117
BINDING SITE FOR RESIDUE SO4 B 401
11
BC2
SOFTWARE
ILE A:22 , ASN A:23 , PHE A:26 , TYR A:45 , MET A:52 , ALA A:55 , ILE B:22 , ASN B:23 , PHE B:26 , TYR B:45 , MET B:52 , HOH B:411
BINDING SITE FOR RESIDUE HEM B 200
12
BC3
SOFTWARE
GLY C:145 , LEU C:146 , GLN C:147 , HOH C:403
BINDING SITE FOR RESIDUE SO4 C 250
13
BC4
SOFTWARE
GLU C:18 , GLU C:51 , HIS C:54 , GLU C:127 , FE2 C:301 , HOH C:418
BINDING SITE FOR RESIDUE FE2 C 300
14
BC5
SOFTWARE
GLU C:51 , GLU C:94 , GLU C:127 , HIS C:130 , FE2 C:300
BINDING SITE FOR RESIDUE FE2 C 301
15
BC6
SOFTWARE
HIS C:46 , ASP C:50
BINDING SITE FOR RESIDUE FE2 C 400
16
BC7
SOFTWARE
GLY D:145 , LEU D:146 , GLN D:147 , HOH D:418
BINDING SITE FOR RESIDUE SO4 D 250
17
BC8
SOFTWARE
GLU D:18 , GLU D:51 , HIS D:54 , GLU D:127 , FE2 D:301
BINDING SITE FOR RESIDUE FE2 D 300
18
BC9
SOFTWARE
GLU D:51 , GLU D:94 , GLU D:127 , HIS D:130 , FE2 D:300
BINDING SITE FOR RESIDUE FE2 D 301
19
CC1
SOFTWARE
HIS D:46 , ASP D:50
BINDING SITE FOR RESIDUE FE2 D 400
20
CC2
SOFTWARE
ILE C:22 , ASN C:23 , PHE C:26 , TYR C:45 , MET C:52 , ALA C:55 , LEU D:19 , ASN D:23 , PHE D:26 , TYR D:45 , MET D:52 , HOH D:402
BINDING SITE FOR RESIDUE HEM D 200
21
CC3
SOFTWARE
GLY E:145 , LEU E:146 , GLN E:147
BINDING SITE FOR RESIDUE SO4 E 250
22
CC4
SOFTWARE
GLU E:18 , GLU E:51 , HIS E:54 , GLU E:127 , FE2 E:301
BINDING SITE FOR RESIDUE FE2 E 300
23
CC5
SOFTWARE
GLU E:51 , GLU E:94 , GLU E:127 , HIS E:130 , FE2 E:300
BINDING SITE FOR RESIDUE FE2 E 301
24
CC6
SOFTWARE
HIS E:46 , ASP E:50
BINDING SITE FOR RESIDUE FE2 E 400
25
CC7
SOFTWARE
GLY F:145 , LEU F:146 , GLN F:147 , HOH F:414
BINDING SITE FOR RESIDUE SO4 F 250
26
CC8
SOFTWARE
GLU F:18 , GLU F:51 , HIS F:54 , GLU F:127 , FE2 F:301
BINDING SITE FOR RESIDUE FE2 F 300
27
CC9
SOFTWARE
GLU F:51 , GLU F:94 , GLU F:127 , HIS F:130 , FE2 F:300
BINDING SITE FOR RESIDUE FE2 F 301
28
DC1
SOFTWARE
HIS F:46 , ASP F:50
BINDING SITE FOR RESIDUE FE2 F 400
29
DC2
SOFTWARE
ARG F:117 , ARG I:117 , ARG K:117
BINDING SITE FOR RESIDUE SO4 F 401
30
DC3
SOFTWARE
ILE E:22 , ASN E:23 , PHE E:26 , TYR E:45 , MET E:52 , ALA E:55 , LEU F:19 , ILE F:22 , ASN F:23 , PHE F:26 , TYR F:45 , MET F:52
BINDING SITE FOR RESIDUE HEM F 200
31
DC4
SOFTWARE
GLY G:145 , LEU G:146 , GLN G:147 , HOH G:411
BINDING SITE FOR RESIDUE SO4 G 250
32
DC5
SOFTWARE
GLU G:18 , GLU G:51 , HIS G:54 , GLU G:127 , FE2 G:301 , HOH G:405
BINDING SITE FOR RESIDUE FE2 G 300
33
DC6
SOFTWARE
GLU G:51 , GLU G:94 , GLU G:127 , HIS G:130 , FE2 G:300
BINDING SITE FOR RESIDUE FE2 G 301
34
DC7
SOFTWARE
HIS G:46 , ASP G:50
BINDING SITE FOR RESIDUE FE2 G 400
35
DC8
SOFTWARE
ARG E:117 , ARG G:117 , ARG L:117
BINDING SITE FOR RESIDUE SO4 G 401
36
DC9
SOFTWARE
ILE G:22 , ASN G:23 , PHE G:26 , TYR G:45 , MET G:52 , ALA G:55 , LEU H:19 , ASN H:23 , PHE H:26 , TYR H:45 , MET H:52 , HOH H:401
BINDING SITE FOR RESIDUE HEM G 200
37
EC1
SOFTWARE
GLY H:145 , LEU H:146 , GLN H:147
BINDING SITE FOR RESIDUE SO4 H 250
38
EC2
SOFTWARE
GLU H:18 , GLU H:51 , HIS H:54 , GLU H:127 , FE2 H:301
BINDING SITE FOR RESIDUE FE2 H 300
39
EC3
SOFTWARE
GLU H:51 , GLU H:94 , GLU H:127 , HIS H:130 , FE2 H:300
BINDING SITE FOR RESIDUE FE2 H 301
40
EC4
SOFTWARE
HIS H:46 , ASP H:50
BINDING SITE FOR RESIDUE FE2 H 400
41
EC5
SOFTWARE
GLY I:145 , LEU I:146 , GLN I:147 , HOH I:417
BINDING SITE FOR RESIDUE SO4 I 250
42
EC6
SOFTWARE
GLU I:18 , GLU I:51 , HIS I:54 , GLU I:127 , FE2 I:301
BINDING SITE FOR RESIDUE FE2 I 300
43
EC7
SOFTWARE
GLU I:51 , GLU I:94 , GLU I:127 , HIS I:130 , FE2 I:300
BINDING SITE FOR RESIDUE FE2 I 301
44
EC8
SOFTWARE
HIS I:46 , ASP I:50
BINDING SITE FOR RESIDUE FE2 I 400
45
EC9
SOFTWARE
ILE I:22 , ASN I:23 , PHE I:26 , TYR I:45 , MET I:52 , ALA I:55 , ASN J:23 , PHE J:26 , TYR J:45 , MET J:52 , HOH J:412
BINDING SITE FOR RESIDUE HEM I 200
46
FC1
SOFTWARE
GLY J:145 , LEU J:146 , GLN J:147 , HOH J:409
BINDING SITE FOR RESIDUE SO4 J 250
47
FC2
SOFTWARE
GLU J:18 , GLU J:51 , HIS J:54 , GLU J:127 , FE2 J:301
BINDING SITE FOR RESIDUE FE2 J 300
48
FC3
SOFTWARE
GLU J:51 , GLU J:94 , GLU J:127 , HIS J:130 , FE2 J:300
BINDING SITE FOR RESIDUE FE2 J 301
49
FC4
SOFTWARE
HIS J:46 , ASP J:50
BINDING SITE FOR RESIDUE FE2 J 400
50
FC5
SOFTWARE
GLY K:145 , LEU K:146 , GLN K:147
BINDING SITE FOR RESIDUE SO4 K 250
51
FC6
SOFTWARE
GLU K:18 , GLU K:51 , HIS K:54 , GLU K:127
BINDING SITE FOR RESIDUE FE2 K 300
52
FC7
SOFTWARE
GLU K:51 , GLU K:94 , GLU K:127 , HIS K:130
BINDING SITE FOR RESIDUE FE2 K 301
53
FC8
SOFTWARE
HIS K:46 , ASP K:50
BINDING SITE FOR RESIDUE FE2 K 400
54
FC9
SOFTWARE
GLY L:145 , LEU L:146 , GLN L:147
BINDING SITE FOR RESIDUE SO4 L 250
55
GC1
SOFTWARE
GLU L:18 , GLU L:51 , HIS L:54 , GLU L:127
BINDING SITE FOR RESIDUE FE2 L 300
56
GC2
SOFTWARE
GLU L:51 , GLU L:94 , GLU L:127 , HIS L:130
BINDING SITE FOR RESIDUE FE2 L 301
57
GC3
SOFTWARE
HIS L:46 , ASP L:50
BINDING SITE FOR RESIDUE FE2 L 400
58
GC4
SOFTWARE
ILE K:22 , ASN K:23 , PHE K:26 , TYR K:45 , MET K:52 , ALA K:55 , ILE L:22 , ASN L:23 , PHE L:26 , TYR L:45 , ILE L:49 , MET L:52 , HOH L:402
BINDING SITE FOR RESIDUE HEM L 200
[
close Site info
]
SAPs(SNPs)/Variants
(10, 120)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_BFR_ECOLI_001 (K38M, chain A/B/C/D/E/F/G/H/I/J/K/L, )
02: VAR_BFR_ECOLI_002 (R57K, chain A/B/C/D/E/F/G/H/I/J/K/L, )
03: VAR_BFR_ECOLI_003 (L68I, chain A/B/C/D/E/F/G/H/I/J/K/L, )
04: VAR_BFR_ECOLI_004 (N78G, chain A/B/C/D/E/F/G/H/I/J/K/L, )
05: VAR_BFR_ECOLI_005 (R88Q, chain A/B/C/D/E/F/G/H/I/J/K/L, )
06: VAR_BFR_ECOLI_006 (A92R, chain A/B/C/D/E/F/G/H/I/J/K/L, )
07: VAR_BFR_ECOLI_007 (D96E, chain A/B/C/D/E/F/G/H/I/J/K/L, )
08: VAR_BFR_ECOLI_008 (N100D, chain A/B/C/D/E/F/G/H/I/J/K/L, )
09: VAR_BFR_ECOLI_009 (G106A, chain A/B/C/D/E/F/G/H/I/J/K/L, )
10: VAR_BFR_ECOLI_010 (R125A, chain A/B/C/D/E/F/G/H/I/J/K/L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_BFR_ECOLI_001
*
K
38
M
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
K
38
M
02
UniProt
VAR_BFR_ECOLI_002
*
R
57
K
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
R
57
K
03
UniProt
VAR_BFR_ECOLI_003
*
L
68
I
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
L
68
I
04
UniProt
VAR_BFR_ECOLI_004
*
N
78
G
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
N
78
G
05
UniProt
VAR_BFR_ECOLI_005
*
R
88
Q
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
R
88
Q
06
UniProt
VAR_BFR_ECOLI_006
*
A
92
R
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
A
92
R
07
UniProt
VAR_BFR_ECOLI_007
*
D
96
E
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
D
96
E
08
UniProt
VAR_BFR_ECOLI_008
*
N
100
D
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
N
100
D
09
UniProt
VAR_BFR_ECOLI_009
*
G
106
A
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
G
106
A
10
UniProt
VAR_BFR_ECOLI_010
*
R
125
A
BFR_ECOLI
---
---
A/B/C/D/E/F/G/H/I/J/K/L
R
125
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: BACTERIOFERRITIN (A:1-19,B:1-19,C:1-19,D:1-19,E:1-19...)
2: FERRITIN_LIKE (A:1-145,B:1-145,C:1-145,D:1-145,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BACTERIOFERRITIN
PS00549
Bacterioferritin signature.
BFR_ECOLI
1-19
12
A:1-19
B:1-19
C:1-19
D:1-19
E:1-19
F:1-19
G:1-19
H:1-19
I:1-19
J:1-19
K:1-19
L:1-19
2
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
BFR_ECOLI
1-145
12
A:1-145
B:1-145
C:1-145
D:1-145
E:1-145
F:1-145
G:1-145
H:1-145
I:1-145
J:1-145
K:1-145
L:1-145
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d3e1ma_ (A:)
1b: SCOP_d3e1mb_ (B:)
1c: SCOP_d3e1mc_ (C:)
1d: SCOP_d3e1md_ (D:)
1e: SCOP_d3e1me_ (E:)
1f: SCOP_d3e1mf_ (F:)
1g: SCOP_d3e1mg_ (G:)
1h: SCOP_d3e1mh_ (H:)
1i: SCOP_d3e1mi_ (I:)
1j: SCOP_d3e1mj_ (J:)
1k: SCOP_d3e1mk_ (K:)
1l: SCOP_d3e1ml_ (L:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Bacterioferritin (cytochrome b1)
(19)
Escherichia coli [TaxId: 562]
(11)
1a
d3e1ma_
A:
1b
d3e1mb_
B:
1c
d3e1mc_
C:
1d
d3e1md_
D:
1e
d3e1me_
E:
1f
d3e1mf_
F:
1g
d3e1mg_
G:
1h
d3e1mh_
H:
1i
d3e1mi_
I:
1j
d3e1mj_
J:
1k
d3e1mk_
K:
1l
d3e1ml_
L:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_3e1mA00 (A:1-158)
1b: CATH_3e1mB00 (B:1-158)
1c: CATH_3e1mC00 (C:1-158)
1d: CATH_3e1mD00 (D:1-158)
1e: CATH_3e1mE00 (E:1-158)
1f: CATH_3e1mF00 (F:1-158)
1g: CATH_3e1mG00 (G:1-158)
1h: CATH_3e1mH00 (H:1-158)
1i: CATH_3e1mI00 (I:1-158)
1j: CATH_3e1mJ00 (J:1-158)
1k: CATH_3e1mK00 (K:1-158)
1l: CATH_3e1mL00 (L:1-158)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Escherichia coli. Organism_taxid: 83333. Strain: k-12.
(7)
1a
3e1mA00
A:1-158
1b
3e1mB00
B:1-158
1c
3e1mC00
C:1-158
1d
3e1mD00
D:1-158
1e
3e1mE00
E:1-158
1f
3e1mF00
F:1-158
1g
3e1mG00
G:1-158
1h
3e1mH00
H:1-158
1i
3e1mI00
I:1-158
1j
3e1mJ00
J:1-158
1k
3e1mK00
K:1-158
1l
3e1mL00
L:1-158
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (340 KB)
Header - Asym.Unit
Biol.Unit 1 (641 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3E1M
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help