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3E0L
Asym. Unit
Info
Asym.Unit (146 KB)
Biol.Unit 1 (141 KB)
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(1)
Title
:
COMPUTATIONALLY DESIGNED AMMELIDE DEAMINASE
Authors
:
P. M. Murphy, J. M. Bolduc, J. L. Gallaher, B. L. Stoddard, D. Baker
Date
:
31 Jul 08 (Deposition) - 03 Mar 09 (Release) - 01 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.37
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Computational-Design Backbone-Flexibility Loop-Remodeling Guanine Cytosine Ammelide Deaminase, Hydrolase, Metal- Binding, Zinc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. M. Murphy, J. M. Bolduc, J. L. Gallaher, B. L. Stoddard, D. Baker
Alteration Of Enzyme Specificity By Computational Loop Remodeling And Design.
Proc. Natl. Acad. Sci. Usa V. 106 9215 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:82 , HIS A:84 , HIS A:238 , ASP A:328 , HOH A:1463
BINDING SITE FOR RESIDUE ZN A 1452
2
AC2
SOFTWARE
HIS B:82 , HIS B:84 , HIS B:238 , ASP B:328 , HOH B:1468
BINDING SITE FOR RESIDUE ZN B 1452
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
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Exons
(14, 28)
Info
All Exons
Exon 1.1d (A:8-41 | B:8-41)
Exon 1.3a (A:42-71 | B:42-71)
Exon 1.5 (A:71-128 | B:71-128)
Exon 1.6a (A:129-158 | B:129-158)
Exon 1.7 (A:158-193 | B:158-193)
Exon 1.9 (A:193-202 | B:193-202)
Exon 1.10 (A:203-236 (gaps) | B:203-236 (gaps...)
Exon 1.11 (A:237-272 | B:237-272)
Exon 1.12a (A:273-305 | B:273-305)
Exon 1.13 (A:305-328 | B:305-328)
Exon 1.14 (A:328-377 | B:328-377)
Exon 1.15 (A:377-420 | B:377-420)
Exon 1.16 (A:421-430 | B:421-430)
Exon 1.17c (A:430-449 | B:430-449)
View:
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All Exon Boundaries
01: Boundary -/1.1d
02: Boundary 1.1d/1.3a
03: Boundary 1.3a/1.5
04: Boundary 1.5/1.6a
05: Boundary 1.6a/1.7
06: Boundary 1.7/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12a
10: Boundary 1.12a/1.13
11: Boundary 1.13/1.14
12: Boundary 1.14/1.15
13: Boundary 1.15/1.16
14: Boundary 1.16/1.17c
15: Boundary 1.17c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000358399
1d
ENSE00001951441
chr9:
74764383-74764598
216
GUAD_HUMAN
1-41
41
2
A:8-41
B:8-41
34
34
1.3a
ENST00000358399
3a
ENSE00001751942
chr9:
74810416-74810504
89
GUAD_HUMAN
42-71
30
2
A:42-71
B:42-71
30
30
1.5
ENST00000358399
5
ENSE00001626863
chr9:
74817487-74817658
172
GUAD_HUMAN
71-128
58
2
A:71-128
B:71-128
58
58
1.6a
ENST00000358399
6a
ENSE00001774554
chr9:
74825603-74825690
88
GUAD_HUMAN
129-158
30
2
A:129-158
B:129-158
30
30
1.7
ENST00000358399
7
ENSE00001706302
chr9:
74828802-74828907
106
GUAD_HUMAN
158-193
36
2
A:158-193
B:158-193
36
36
1.9
ENST00000358399
9
ENSE00001591719
chr9:
74834395-74834422
28
GUAD_HUMAN
193-202
10
2
A:193-202
B:193-202
10
10
1.10
ENST00000358399
10
ENSE00001722211
chr9:
74838036-74838143
108
GUAD_HUMAN
203-238
36
2
A:203-236 (gaps)
B:203-236 (gaps)
36
36
1.11
ENST00000358399
11
ENSE00001672840
chr9:
74840593-74840700
108
GUAD_HUMAN
239-274
36
2
A:237-272
B:237-272
36
36
1.12a
ENST00000358399
12a
ENSE00001749359
chr9:
74842859-74842956
98
GUAD_HUMAN
275-307
33
2
A:273-305
B:273-305
33
33
1.13
ENST00000358399
13
ENSE00002175571
chr9:
74846030-74846097
68
GUAD_HUMAN
307-330
24
2
A:305-328
B:305-328
24
24
1.14
ENST00000358399
14
ENSE00001760403
chr9:
74856068-74856214
147
GUAD_HUMAN
330-379
50
2
A:328-377
B:328-377
50
50
1.15
ENST00000358399
15
ENSE00001767251
chr9:
74860064-74860194
131
GUAD_HUMAN
379-422
44
2
A:377-420
B:377-420
44
44
1.16
ENST00000358399
16
ENSE00001624681
chr9:
74862322-74862349
28
GUAD_HUMAN
423-432
10
2
A:421-430
B:421-430
10
10
1.17c
ENST00000358399
17c
ENSE00001646828
chr9:
74863188-74867140
3953
GUAD_HUMAN
432-454
23
2
A:430-449
B:430-449
20
20
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Asymmetric Unit 1
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Asym.Unit (146 KB)
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