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3DZZ
Asym. Unit
Info
Asym.Unit (147 KB)
Biol.Unit 1 (138 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE PLP-DEPENDENT AMINOTRANSFERASE (LBUL_1103) FROM LACTOBACILLUS DELBRUECKII SUBSP. AT 1.61 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
30 Jul 08 (Deposition) - 12 Aug 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.61
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Putative Plp-Dependent Aminotransferase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Pyridoxal 5'-Phosphate-Dependent C-S Lyase (Yp_813084. 1) From Lactobacillus Delbrueckii Bulgaricus Atcc Baa-365 At 1. 61 A Resolution
To Be Published
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Hetero Components
(7, 34)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPa)
4b: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPb)
5a: SELENOMETHIONINE (MSEa)
5b: SELENOMETHIONINE (MSEb)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
5k: SELENOMETHIONINE (MSEk)
5l: SELENOMETHIONINE (MSEl)
5m: SELENOMETHIONINE (MSEm)
5n: SELENOMETHIONINE (MSEn)
5o: SELENOMETHIONINE (MSEo)
5p: SELENOMETHIONINE (MSEp)
5q: SELENOMETHIONINE (MSEq)
5r: SELENOMETHIONINE (MSEr)
5s: SELENOMETHIONINE (MSEs)
5t: SELENOMETHIONINE (MSEt)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
6c: DI(HYDROXYETHYL)ETHER (PEGc)
6d: DI(HYDROXYETHYL)ETHER (PEGd)
6e: DI(HYDROXYETHYL)ETHER (PEGe)
7a: TETRAETHYLENE GLYCOL (PG4a)
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CA
2
Ligand/Ion
CALCIUM ION
3
CL
2
Ligand/Ion
CHLORIDE ION
4
LLP
2
Mod. Amino Acid
2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5
MSE
20
Mod. Amino Acid
SELENOMETHIONINE
6
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:208 , HOH A:594 , HOH A:595 , HOH A:617 , ASP B:150 , GLU B:153
BINDING SITE FOR RESIDUE CA A 391
02
AC2
SOFTWARE
GLU A:308 , HOH A:555 , HOH A:561
BINDING SITE FOR RESIDUE CA A 392
03
AC3
SOFTWARE
ARG A:255
BINDING SITE FOR RESIDUE CL A 393
04
AC4
SOFTWARE
ILE A:33 , ALA A:34 , TYR A:118 , LLP A:233 , ARG A:364 , HOH A:514 , HOH A:516 , HOH A:612 , TYR B:59
BINDING SITE FOR RESIDUE ACT A 394
05
AC5
SOFTWARE
ARG B:255
BINDING SITE FOR RESIDUE CL B 391
06
AC6
SOFTWARE
TYR A:59 , ILE B:33 , ALA B:34 , TYR B:118 , LLP B:233 , ARG B:364 , HOH B:557 , HOH B:595 , HOH B:597
BINDING SITE FOR RESIDUE ACT B 392
07
AC7
SOFTWARE
ALA B:189 , GLN B:192 , ASN B:223 , TRP B:224 , ASN B:249 , HOH B:514
BINDING SITE FOR RESIDUE PG4 B 393
08
AC8
SOFTWARE
GLN A:192 , ASN A:223 , TRP A:224 , ASN A:249 , HOH A:553
BINDING SITE FOR RESIDUE PEG A 395
09
AC9
SOFTWARE
GLN A:15 , HOH A:669
BINDING SITE FOR RESIDUE PEG A 396
10
BC1
SOFTWARE
LEU A:206 , THR A:207 , ASP A:208 , ARG A:295 , ARG A:302 , HOH A:513 , HOH A:588 , ALA B:149 , GLU B:152 , GLU B:153 , HOH B:559
BINDING SITE FOR RESIDUE PEG A 397
11
BC2
SOFTWARE
SER A:91 , GLY A:92 , VAL A:94 , PRO A:95 , LLP A:233 , HIS A:241 , GLU B:267 , HOH B:491 , HOH B:579 , HOH B:592
BINDING SITE FOR RESIDUE PEG B 394
12
BC3
SOFTWARE
TYR B:67 , CYS B:87 , GLU B:257 , HOH B:405 , HOH B:523 , HOH B:548 , HOH B:617
BINDING SITE FOR RESIDUE PEG B 395
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3dzza_ (A:)
1b: SCOP_d3dzzb_ (B:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
automated matches
(163)
Protein domain
:
automated matches
(163)
Lactobacillus delbrueckii [TaxId: 321956]
(1)
1a
d3dzza_
A:
1b
d3dzzb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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