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3DZA
Asym. Unit
Info
Asym.Unit (149 KB)
Biol.Unit 1 (139 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE MEMBRANE PROTEIN OF UNKNOWN FUNCTION (YFDX) FROM KLEBSIELLA PNEUMONIAE SUBSP. AT 1.65 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
29 Jul 08 (Deposition) - 12 Aug 08 (Release) - 23 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Membrane Protein Of Unknown Function (Yp_001337144. 1) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 1. 65 A Resolution
To Be Published
[
close entry info
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Hetero Components
(4, 55)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
EDO
24
Ligand/Ion
1,2-ETHANEDIOL
3
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
4
ZN
10
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:77 , GLU B:169 , HOH B:590 , HOH B:597 , HOH B:614 , HOH B:624
BINDING SITE FOR RESIDUE ZN A 501
02
AC2
SOFTWARE
GLU A:169 , HOH A:547 , HOH A:557 , HOH A:574 , HIS B:77 , HOH B:557
BINDING SITE FOR RESIDUE ZN A 502
03
AC3
SOFTWARE
ASP A:212 , HOH A:565 , HOH A:578 , ASP D:212 , HOH D:754 , HOH D:764
BINDING SITE FOR RESIDUE ZN A 503
04
AC4
SOFTWARE
GLU A:138 , GLU B:138 , HOH B:613 , HOH B:632 , HOH B:760
BINDING SITE FOR RESIDUE ZN B 502
05
AC5
SOFTWARE
ASP B:212 , HOH B:539 , HOH B:567 , HOH B:576 , ASP C:212 , HOH C:543
BINDING SITE FOR RESIDUE ZN B 503
06
AC6
SOFTWARE
EDO A:19 , GLN B:79 , PRO B:80 , ASP B:81 , SER B:82 , HOH B:640
BINDING SITE FOR RESIDUE ACT B 1
07
AC7
SOFTWARE
THR A:45 , ASN A:63 , THR B:45 , ASN B:63 , HOH B:510 , HOH B:512 , HOH B:584 , HOH B:656
BINDING SITE FOR RESIDUE ACT B 3
08
AC8
SOFTWARE
HIS C:77 , EDO D:16 , GLU D:169 , HOH D:730 , HOH D:761
BINDING SITE FOR RESIDUE ZN C 501
09
AC9
SOFTWARE
ASP C:108 , GLU C:214 , HOH C:701 , HOH C:717
BINDING SITE FOR RESIDUE ZN C 503
10
BC1
SOFTWARE
ASP B:97 , HOH B:696 , GLU C:146 , HOH C:657
BINDING SITE FOR RESIDUE ZN C 504
11
BC2
SOFTWARE
EDO C:13 , GLU C:169 , HOH C:557 , HOH C:566 , HIS D:77
BINDING SITE FOR RESIDUE ZN C 505
12
BC3
SOFTWARE
GLN C:79 , PRO C:80 , ASP C:81 , SER C:82 , HOH C:564 , HOH C:597
BINDING SITE FOR RESIDUE ACT C 4
13
BC4
SOFTWARE
GLU C:138 , GLU D:138 , HOH D:823 , HOH D:887 , HOH D:946
BINDING SITE FOR RESIDUE ZN D 502
14
BC5
SOFTWARE
THR C:45 , ASN C:63 , THR D:45 , ASN D:63 , ARG D:66 , HOH D:741 , HOH D:753 , HOH D:859 , HOH D:866
BINDING SITE FOR RESIDUE ACT D 2
15
BC6
SOFTWARE
GLN D:79 , PRO D:80 , ASP D:81 , SER D:82 , HOH D:842 , HOH D:909
BINDING SITE FOR RESIDUE ACT D 5
16
BC7
SOFTWARE
TYR A:172 , GLU A:206 , ILE A:209 , VAL A:211 , HOH A:516 , HOH A:610
BINDING SITE FOR RESIDUE EDO A 6
17
BC8
SOFTWARE
ALA A:96 , SER A:100 , TRP A:101 , HOH A:520 , HOH A:673 , HOH A:697
BINDING SITE FOR RESIDUE EDO A 12
18
BC9
SOFTWARE
GLN A:178 , LYS A:181 , ALA A:182 , GLN A:185 , HOH A:505 , HOH A:777 , ASP D:130
BINDING SITE FOR RESIDUE EDO A 18
19
CC1
SOFTWARE
ALA A:149 , GLY A:151 , ACT B:1 , GLY B:78 , PRO B:80 , ASP B:81 , HOH B:599 , HOH B:712
BINDING SITE FOR RESIDUE EDO A 19
20
CC2
SOFTWARE
ALA A:62 , ILE A:121 , ASN A:122 , HOH A:510 , HOH A:523 , HOH A:718
BINDING SITE FOR RESIDUE EDO A 25
21
CC3
SOFTWARE
ASN B:122 , HOH B:518 , HOH B:521 , HOH B:677
BINDING SITE FOR RESIDUE EDO B 14
22
CC4
SOFTWARE
ALA B:96 , SER B:100 , TRP B:101 , HOH B:514 , HOH B:637 , HOH B:723
BINDING SITE FOR RESIDUE EDO B 15
23
CC5
SOFTWARE
EDO B:22 , MSE B:215 , ALA C:109
BINDING SITE FOR RESIDUE EDO B 21
24
CC6
SOFTWARE
EDO B:21 , ARG B:161 , LYS C:85 , HOH C:563
BINDING SITE FOR RESIDUE EDO B 22
25
CC7
SOFTWARE
GLN A:69 , TYR B:172 , HOH B:730 , HOH B:798
BINDING SITE FOR RESIDUE EDO B 24
26
CC8
SOFTWARE
SER A:124 , HOH A:708 , HOH B:750 , HOH B:781
BINDING SITE FOR RESIDUE EDO B 27
27
CC9
SOFTWARE
GLU B:206 , ILE B:209 , VAL B:211 , HOH B:534 , HOH B:722
BINDING SITE FOR RESIDUE EDO B 29
28
DC1
SOFTWARE
ILE C:121 , ASN C:122 , HOH C:522 , HOH C:527 , HOH C:697
BINDING SITE FOR RESIDUE EDO C 7
29
DC2
SOFTWARE
LYS C:49 , GLN C:60 , ALA C:96 , SER C:100 , TRP C:101 , HOH C:521 , HOH C:587
BINDING SITE FOR RESIDUE EDO C 11
30
DC3
SOFTWARE
LEU C:55 , VAL C:57 , GLU C:169 , GLN C:171 , ZN C:505 , HOH C:557 , HOH C:566 , HOH C:721 , HIS D:77
BINDING SITE FOR RESIDUE EDO C 13
31
DC4
SOFTWARE
ASP B:130 , LYS C:181 , ALA C:182 , GLN C:185 , HOH C:518
BINDING SITE FOR RESIDUE EDO C 20
32
DC5
SOFTWARE
HOH D:717 , HOH D:947
BINDING SITE FOR RESIDUE EDO D 8
33
DC6
SOFTWARE
LYS D:49 , ALA D:96 , SER D:100 , TRP D:101 , HOH D:724 , HOH D:853 , HOH D:855
BINDING SITE FOR RESIDUE EDO D 9
34
DC7
SOFTWARE
ALA A:115 , HOH A:598 , GLN B:46 , GLU B:50 , HOH B:659 , ARG D:161
BINDING SITE FOR RESIDUE EDO D 10
35
DC8
SOFTWARE
HIS C:77 , ZN C:501 , LEU D:55 , VAL D:57 , GLU D:169 , HOH D:730 , HOH D:761
BINDING SITE FOR RESIDUE EDO D 16
36
DC9
SOFTWARE
ASP A:130 , GLN D:178 , ALA D:182 , GLN D:185 , HOH D:731
BINDING SITE FOR RESIDUE EDO D 17
37
EC1
SOFTWARE
GLN C:69 , TYR D:172 , HOH D:958
BINDING SITE FOR RESIDUE EDO D 23
38
EC2
SOFTWARE
ILE D:121 , ASN D:122 , HOH D:725 , HOH D:733 , HOH D:906
BINDING SITE FOR RESIDUE EDO D 26
39
EC3
SOFTWARE
ARG A:161 , MSE A:215
BINDING SITE FOR RESIDUE EDO D 28
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
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)
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