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3DXC
Asym. Unit
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Asym.Unit (60 KB)
Biol.Unit 1 (29 KB)
Biol.Unit 2 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE INTRACELLULAR DOMAIN OF HUMAN APP IN COMPLEX WITH FE65-PTB2
Authors
:
J. Radzimanowski, I. Sinning, K. Wild
Date
:
24 Jul 08 (Deposition) - 16 Sep 08 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Alzheimer'S Disease, App, Aicd, Fe65, Ptb Domain, Alzheimer Disease, Amyloid, Apoptosis, Cell Adhesion, Coated Pit, Disease Mutation, Endocytosis, Glycoprotein, Heparin-Binding, Iron, Membrane, Metal- Binding, Notch Signaling Pathway, Phosphoprotein, Protease Inhibitor, Proteoglycan, Serine Protease Inhibitor, Transmembrane, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Radzimanowski, B. Simon, M. Sattler, K. Beyreuther, I. Sinning, K. Wild
Structure Of The Intracellular Domain Of The Amyloid Precursor Protein In Complex With Fe65-Ptb2.
Embo Rep. V. 9 1134 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: PID (A:542-666|-)
2: A4_INTRA (B:681-688,D:681-688)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PID
PS01179
Phosphotyrosine interaction domain (PID) profile.
APBB1_HUMAN
542-699
370-509
1
A:542-666
-
2
A4_INTRA
PS00320
Amyloidogenic glycoprotein intracellular domain signature.
A4_HUMAN
756-763
2
B:681-688
D:681-688
[
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Exons
(5, 10)
Info
All Exons
Exon 1.23f (B:666-693 | D:667-692)
Exon 2.12l (A:537-558 | C:543-558)
Exon 2.14c (A:558-596 | C:558-596)
Exon 2.14d (A:597-655 | C:597-655)
Exon 2.14i (A:656-666 | C:656-665)
View:
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All Exon Boundaries
1: Boundary 1.22a/1.23f
2: Boundary 1.23f/-
3: Boundary 2.12j/2.12l
4: Boundary 2.12l/2.14c
5: Boundary 2.14c/2.14d
6: Boundary 2.14d/2.14i
7: Boundary 2.14i/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2f
ENST00000346798
2f
ENSE00001909719
chr21:
27542972-27542882
91
A4_HUMAN
1-19
19
0
-
-
1.5b
ENST00000346798
5b
ENSE00001612324
chr21:
27484463-27484296
168
A4_HUMAN
20-75
56
0
-
-
1.6b
ENST00000346798
6b
ENSE00001017345
chr21:
27462388-27462259
130
A4_HUMAN
76-119
44
0
-
-
1.7b
ENST00000346798
7b
ENSE00001726854
chr21:
27425664-27425552
113
A4_HUMAN
119-156
38
0
-
-
1.8a
ENST00000346798
8a
ENSE00001017348
chr21:
27423509-27423316
194
A4_HUMAN
157-221
65
0
-
-
1.9b
ENST00000346798
9b
ENSE00001303241
chr21:
27394358-27394156
203
A4_HUMAN
221-289
69
0
-
-
1.11
ENST00000346798
11
ENSE00001327560
chr21:
27372497-27372330
168
A4_HUMAN
289-345
57
0
-
-
1.12a
ENST00000346798
12a
ENSE00001309322
chr21:
27369731-27369675
57
A4_HUMAN
345-364
20
0
-
-
1.13
ENST00000346798
13
ENSE00001017338
chr21:
27354790-27354657
134
A4_HUMAN
364-408
45
0
-
-
1.14a
ENST00000346798
14a
ENSE00001608815
chr21:
27348341-27348267
75
A4_HUMAN
409-433
25
0
-
-
1.15b
ENST00000346798
15b
ENSE00001017350
chr21:
27347541-27347383
159
A4_HUMAN
434-486
53
0
-
-
1.16
ENST00000346798
16
ENSE00001299537
chr21:
27328069-27327941
129
A4_HUMAN
487-529
43
0
-
-
1.17
ENST00000346798
17
ENSE00001299406
chr21:
27327003-27326904
100
A4_HUMAN
530-563
34
0
-
-
1.19
ENST00000346798
19
ENSE00001299617
chr21:
27284274-27284053
222
A4_HUMAN
563-637
75
0
-
-
1.20
ENST00000346798
20
ENSE00001324614
chr21:
27277389-27277336
54
A4_HUMAN
637-655
19
0
-
-
1.21b
ENST00000346798
21b
ENSE00001318724
chr21:
27269985-27269885
101
A4_HUMAN
655-688
34
0
-
-
1.22a
ENST00000346798
22a
ENSE00001290140
chr21:
27264180-27264034
147
A4_HUMAN
689-737
49
0
-
-
1.23f
ENST00000346798
23f
ENSE00001725664
chr21:
27254082-27252861
1222
A4_HUMAN
738-770
33
2
B:666-693
D:667-692
28
26
2.2b
ENST00000389906
2b
ENSE00001526385
chr11:
6440300-6440215
86
APBB1_HUMAN
-
0
0
-
-
2.3b
ENST00000389906
3b
ENSE00001291677
chr11:
6432591-6431857
735
APBB1_HUMAN
1-241
241
0
-
-
2.7c
ENST00000389906
7c
ENSE00001102023
chr11:
6425052-6424877
176
APBB1_HUMAN
241-299
59
0
-
-
2.8
ENST00000389906
8
ENSE00001102020
chr11:
6424774-6424718
57
APBB1_HUMAN
300-318
19
0
-
-
2.9
ENST00000389906
9
ENSE00001101992
chr11:
6424634-6424549
86
APBB1_HUMAN
319-347
29
0
-
-
2.10
ENST00000389906
10
ENSE00001101995
chr11:
6424438-6424375
64
APBB1_HUMAN
347-368
22
0
-
-
2.11c
ENST00000389906
11c
ENSE00001102016
chr11:
6423955-6423806
150
APBB1_HUMAN
369-418
50
0
-
-
2.11e
ENST00000389906
11e
ENSE00001101999
chr11:
6423439-6423312
128
APBB1_HUMAN
419-461
43
0
-
-
2.12b
ENST00000389906
12b
ENSE00001102005
chr11:
6422924-6422804
121
APBB1_HUMAN
461-501
41
0
-
-
2.12j
ENST00000389906
12j
ENSE00001101974
chr11:
6422659-6422575
85
APBB1_HUMAN
502-530
29
0
-
-
2.12l
ENST00000389906
12l
ENSE00001102013
chr11:
6422302-6422219
84
APBB1_HUMAN
530-558
29
2
A:537-558
C:543-558
22
16
2.14c
ENST00000389906
14c
ENSE00001101981
chr11:
6417445-6417330
116
APBB1_HUMAN
558-596
39
2
A:558-596
C:558-596
39
39
2.14d
ENST00000389906
14d
ENSE00001101989
chr11:
6417192-6417016
177
APBB1_HUMAN
597-655
59
2
A:597-655
C:597-655
59
59
2.14i
ENST00000389906
14i
ENSE00001301318
chr11:
6416931-6416355
577
APBB1_HUMAN
656-710
55
2
A:656-666
C:656-665
11
10
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3dxca_ (A:)
1b: SCOP_d3dxcc_ (C:)
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All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
automated matches
(50)
Protein domain
:
automated matches
(50)
Human (Homo sapiens) [TaxId: 9606]
(30)
1a
d3dxca_
A:
1b
d3dxcc_
C:
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