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3DWR
Asym. Unit
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Asym.Unit (107 KB)
Biol.Unit 1 (101 KB)
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(1)
Title
:
LEISHMANIA MAJOR COPROPORPHYRINOGEN III OXIDASE WITH BOUND LIGAND
Authors
:
I. Le Trong, E. A. Merritt, Structural Genomics Of Pathogenic Pro Consortium (Sgpp)
Date
:
22 Jul 08 (Deposition) - 09 Sep 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.66
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fragment Cocktail, Structural Genomics, Structural Genomics Of Pathogenic Protozoa Consortium, Sgpp, Heme Biosynthesis, Oxidoreductase, Porphyrin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. A. Merritt, I. Le Trong, E. T. Larson, S. Shibata, Z. Zhang, L. Anderson, J. Ross, C. L. M. J. Verlinde, F. S. Buckner, W. C. Van Voorhis, G. J. W. Hol, E. Fan
Leishmania Major Coproporphyrinogen Iii Oxidase With Bound Ligand
To Be Published
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: CYCLOPENTYLACETIC ACID (0PAa)
1b: CYCLOPENTYLACETIC ACID (0PAb)
1c: CYCLOPENTYLACETIC ACID (0PAc)
1d: CYCLOPENTYLACETIC ACID (0PAd)
1e: CYCLOPENTYLACETIC ACID (0PAe)
1f: CYCLOPENTYLACETIC ACID (0PAf)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0PA
6
Ligand/Ion
CYCLOPENTYLACETIC ACID
2
ACT
5
Ligand/Ion
ACETATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:107 , ARG A:181 , TYR A:241 , ASN A:245 , HOH A:631
BINDING SITE FOR RESIDUE ACT A 402
02
AC2
SOFTWARE
PRO A:225 , TYR A:226 , HOH A:627
BINDING SITE FOR RESIDUE ACT A 403
03
AC3
SOFTWARE
GLY A:44 , GLY A:45 , PHE A:63 , TYR A:293
BINDING SITE FOR RESIDUE ACT A 404
04
AC4
SOFTWARE
PHE A:32
BINDING SITE FOR RESIDUE ACT A 405
05
AC5
SOFTWARE
HIS B:107 , ARG B:181 , TYR B:241 , ASN B:245 , HOH B:593
BINDING SITE FOR RESIDUE ACT B 401
06
AC6
SOFTWARE
TRP A:37 , ARG A:39 , ASN A:62 , SER A:64 , GLY A:260 , ARG A:261 , HOH A:650
BINDING SITE FOR RESIDUE 0PA A 501
07
AC7
SOFTWARE
SER A:93 , GLY A:251 , THR A:252 , SER A:264 , ILE A:265 , ILE A:267 , SER A:268 , HOH A:624
BINDING SITE FOR RESIDUE 0PA A 502
08
AC8
SOFTWARE
SER A:64 , MET A:90 , GLY A:91 , SER A:93 , ASN A:109 , HOH A:628 , HOH A:657
BINDING SITE FOR RESIDUE 0PA A 503
09
AC9
SOFTWARE
SER B:64 , SER B:258 , ILE B:265
BINDING SITE FOR RESIDUE 0PA B 504
10
BC1
SOFTWARE
ASN B:62 , SER B:93 , GLY B:251 , SER B:264 , ILE B:265 , ILE B:267 , HOH B:524
BINDING SITE FOR RESIDUE 0PA B 505
11
BC2
SOFTWARE
SER B:64 , MET B:90 , SER B:93 , ASN B:109 , HOH B:581
BINDING SITE FOR RESIDUE 0PA B 506
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: COPROGEN_OXIDASE (A:165-189,B:165-189)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPROGEN_OXIDASE
PS01021
Coproporphyrinogen III oxidase signature.
HEM6_LEIMA
165-189
2
A:165-189
B:165-189
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3dwra_ (A:)
1b: SCOP_d3dwrb_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Coproporphyrinogen III oxidase
(24)
Superfamily
:
Coproporphyrinogen III oxidase
(11)
Family
:
Coproporphyrinogen III oxidase
(10)
Protein domain
:
automated matches
(5)
Leishmania major [TaxId: 5664]
(3)
1a
d3dwra_
A:
1b
d3dwrb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3dwrA00 (A:1-301)
1b: CATH_3dwrB00 (B:1-301)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
oxygen-dependent coproporphyrinogen oxidase
(11)
Homologous Superfamily
:
oxygen-dependent coproporphyrinogen oxidase
(11)
Leishmania major. Organism_taxid: 5664. Strain: friedlin.
(2)
1a
3dwrA00
A:1-301
1b
3dwrB00
B:1-301
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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