PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3DVP
Asym. Unit
Info
Asym.Unit (36 KB)
Biol.Unit 1 (31 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
PAK1 PEPTIDE BOUND LC8
Authors
:
C. M. Lightcap, J. C. Williams
Date
:
18 Jul 08 (Deposition) - 20 Jan 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Pak1, Lc8, Dlc1, Pin, Complex, Dynein, Microtubule, Motor Protein, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. M. Lightcap, S. Sun, J. D. Lear, U. Rodeck, T. Polenova, J. C. William
Biochemical And Structural Characterization Of The Pak1-Lc8 Interaction.
J. Biol. Chem. V. 283 27314 2008
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DYNEIN_LIGHT_1 (A:55-69,B:55-69)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DYNEIN_LIGHT_1
PS01239
Dynein light chain type 1 signature.
DYL1_DROME
55-69
2
A:55-69
B:55-69
[
close PROSITE info
]
Exons
(1, 2)
Info
All Exons
Exon 1.13d (C:213-221 | D:213-221)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.12a/1.13d
2: Boundary 1.13d/1.14a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000356341
2a
ENSE00002168503
chr11:
77185107-77184597
511
PAK1_HUMAN
-
0
0
-
-
1.8b
ENST00000356341
8b
ENSE00002169181
chr11:
77103586-77103376
211
PAK1_HUMAN
1-64
64
0
-
-
1.9b
ENST00000356341
9b
ENSE00001153454
chr11:
77091039-77090939
101
PAK1_HUMAN
64-97
34
0
-
-
1.10d
ENST00000356341
10d
ENSE00001153445
chr11:
77090433-77090286
148
PAK1_HUMAN
98-147
50
0
-
-
1.11
ENST00000356341
11
ENSE00001153435
chr11:
77085410-77085373
38
PAK1_HUMAN
147-159
13
0
-
-
1.12a
ENST00000356341
12a
ENSE00000989702
chr11:
77070062-77069943
120
PAK1_HUMAN
160-199
40
0
-
-
1.13d
ENST00000356341
13d
ENSE00000989704
chr11:
77066887-77066713
175
PAK1_HUMAN
200-258
59
2
C:213-221
D:213-221
9
9
1.14a
ENST00000356341
14a
ENSE00000989705
chr11:
77064644-77064581
64
PAK1_HUMAN
258-279
22
0
-
-
1.15c
ENST00000356341
15c
ENSE00000989706
chr11:
77060332-77060284
49
PAK1_HUMAN
279-295
17
0
-
-
1.17b
ENST00000356341
17b
ENSE00001773725
chr11:
77054976-77054864
113
PAK1_HUMAN
296-333
38
0
-
-
1.18
ENST00000356341
18
ENSE00001665540
chr11:
77051808-77051691
118
PAK1_HUMAN
333-372
40
0
-
-
1.19
ENST00000356341
19
ENSE00001693116
chr11:
77048468-77048369
100
PAK1_HUMAN
373-406
34
0
-
-
1.20c
ENST00000356341
20c
ENSE00000989710
chr11:
77047327-77047131
197
PAK1_HUMAN
406-471
66
0
-
-
1.21b
ENST00000356341
21b
ENSE00001757209
chr11:
77043912-77043775
138
PAK1_HUMAN
472-517
46
0
-
-
1.24e
ENST00000356341
24e
ENSE00002141126
chr11:
77034405-77032752
1654
PAK1_HUMAN
518-545
28
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3dvpa_ (A:)
1b: SCOP_d3dvpb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DLC
(20)
Superfamily
:
DLC
(20)
Family
:
DLC
(20)
Protein domain
:
Dynein light chain 1 (DLC1)
(15)
Fruit fly (Drosophila melanogaster) [TaxId: 7227]
(9)
1a
d3dvpa_
A:
1b
d3dvpb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3dvpA00 (A:5-89)
1b: CATH_3dvpB00 (B:5-89)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Protein Inhibitor Of Neuronal Nitric Oxide Synthase
(19)
Homologous Superfamily
:
Protein Inhibitor Of Neuronal Nitric Oxide Synthase;
(19)
Fruit fly (Drosophila melanogaster)
(11)
1a
3dvpA00
A:5-89
1b
3dvpB00
B:5-89
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (36 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3DVP
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
