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3DSZ
Biol. Unit 1
Info
Asym.Unit (72 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (35 KB)
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(1)
Title
:
ENGINEERED HUMAN LIPOCALIN 2 IN COMPLEX WITH Y-DTPA
Authors
:
A. Eichinger, A. Skerra
Date
:
14 Jul 08 (Deposition) - 19 May 09 (Release) - 19 May 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Protein Design, Ligand Binding Protein, Beta Barrel, Engineered Lipocalin, De Novo Protein, Protein Binding, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Kim, A. Eichinger, A. Skerra
High-Affinity Recognition Of Lanthanide(Iii) Chelate Complexes By A Reprogrammed Human Lipocalin 2
J. Am. Chem. Soc. V. 131 3565 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: N-{(1S,2S)-2-[BIS(CARBOXYMETHYL)AM... (LIZa)
1b: N-{(1S,2S)-2-[BIS(CARBOXYMETHYL)AM... (LIZb)
2a: YTTRIUM (III) ION (YT3a)
2b: YTTRIUM (III) ION (YT3b)
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No.
Name
Count
Type
Full Name
1
LIZ
1
Ligand/Ion
N-{(1S,2S)-2-[BIS(CARBOXYMETHYL)AMINO]CYCLOHEXYL}-N-{(2R)-2-[BIS(CARBOXYMETHYL)AMINO]-3-[4-({[2-HYDROXY-1,1-BIS(HYDROXYMETHYL)ETHYL]CARBAMOTHIOYL}AMINO)PHENYL]PROPYL}GLYCINE
2
YT3
1
Ligand/Ion
YTTRIUM (III) ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:33 , ARG A:36 , THR A:52 , GLN A:54 , ALA A:68 , ARG A:70 , ASP A:77 , TYR A:78 , LEU A:79 , TYR A:106 , PHE A:123 , THR A:136 , HOH A:189 , HOH A:193 , HOH A:197 , HOH A:219 , HOH A:323 , HOH A:334 , HOH A:345
BINDING SITE FOR RESIDUE LIZ A 187
2
AC2
SOFTWARE
HOH A:189
BINDING SITE FOR RESIDUE LIZ B 187
3
AC3
SOFTWARE
LYS A:73 , LYS A:74 , GLN B:33 , ARG B:36 , THR B:52 , GLN B:54 , ALA B:68 , ARG B:70 , ASP B:77 , LEU B:79 , TYR B:106 , PHE B:123 , THR B:136 , HOH B:223 , HOH B:231 , HOH B:237 , HOH B:263 , HOH B:280 , HOH B:296
BINDING SITE FOR RESIDUE YT3 B 188
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LIPOCALIN (A:21-34)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPOCALIN
PS00213
Lipocalin signature.
NGAL_HUMAN
41-54
1
A:21-34
-
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Exons
(0, 0)
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3dsza_ (A:)
1b: SCOP_d3dszb_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Retinol binding protein-like
(261)
Protein domain
:
automated matches
(36)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d3dsza_
A:
1b
d3dszb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3dszA00 (A:7-178)
1b: CATH_3dszB00 (B:6-178)
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Organisms
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)
(
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.20, no name defined]
(352)
Human (Homo sapiens)
(91)
1a
3dszA00
A:7-178
1b
3dszB00
B:6-178
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (72 KB)
Header - Asym.Unit
Biol.Unit 1 (34 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
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