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3DRB
Asym. Unit
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Asym.Unit (135 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN BRAIN-TYPE CREATINE KINASE
Authors
:
J. H. Moon, S. M. Bong, K. Y. Hwang, Y. M. Chi
Date
:
11 Jul 08 (Deposition) - 17 Mar 09 (Release) - 17 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Human, Creatine Kinase, Mgadp, Atp-Binding, Cytoplasm, Kinase, Nucleotide-Binding, Phosphoprotein, Polymorphism, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Bong, J. H. Moon, K. H. Nam, K. S. Lee, Y. M. Chi, K. Y. Hwang
Structural Studies Of Human Brain-Type Creatine Kinase Complexed With The Adp-Mg2+-No3- -Creatine Transition-State Analogue Complex
Febs Lett. V. 582 3959 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
SER B:128 , ARG B:130 , ARG B:132 , HIS B:191 , ARG B:236 , MET B:240 , ARG B:292 , GLY B:294 , HIS B:296 , ARG B:320 , GLY B:323 , GLY B:324 , ASP B:335
BINDING SITE FOR RESIDUE ADP B 400
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_025838 (K177R, chain A/B, )
2: VAR_025839 (S309L, chain A/B, )
3: VAR_049674 (L360F, chain A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_025838
K
177
R
KCRB_HUMAN
Polymorphism
36002620
A/B
K
177
R
2
UniProt
VAR_025839
S
309
L
KCRB_HUMAN
Polymorphism
35156510
A/B
S
309
L
3
UniProt
VAR_049674
L
360
F
KCRB_HUMAN
Polymorphism
12505
A/B
L
360
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PHOSPHAGEN_KINASE_N (A:11-98,B:11-98)
2: PHOSPHAGEN_KINASE_C (A:125-367,B:125-367)
3: PHOSPHAGEN_KINASE (A:283-289,B:283-289)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PHOSPHAGEN_KINASE_N
PS51509
Phosphagen kinase N-terminal domain profile.
KCRB_HUMAN
11-98
2
A:11-98
B:11-98
2
PHOSPHAGEN_KINASE_C
PS51510
Phosphagen kinase C-terminal domain profile.
KCRB_HUMAN
125-367
2
A:125-367
B:125-367
3
PHOSPHAGEN_KINASE
PS00112
Phosphagen kinase active site signature.
KCRB_HUMAN
283-289
2
A:283-289
B:283-289
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3drba1 (A:6-102)
1b: SCOP_d3drbb1 (B:6-102)
2a: SCOP_d3drba2 (A:103-381)
2b: SCOP_d3drbb2 (B:103-381)
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Class
:
All alpha proteins
(14657)
Fold
:
Guanido kinase N-terminal domain
(35)
Superfamily
:
Guanido kinase N-terminal domain
(35)
Family
:
automated matches
(14)
Protein domain
:
automated matches
(14)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d3drba1
A:6-102
1b
d3drbb1
B:6-102
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
Guanido kinase catalytic domain
(29)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d3drba2
A:103-381
2b
d3drbb2
B:103-381
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3drbA01 (A:6-102)
1b: CATH_3drbB01 (B:6-102)
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Organisms
(
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase Creatine Kinase; Chain A, domain 1
(26)
Homologous Superfamily
:
Transferase Creatine Kinase, Chain A, domain 1
(26)
Human (Homo sapiens)
(6)
1a
3drbA01
A:6-102
1b
3drbB01
B:6-102
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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