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3DPR
Biol. Unit 1
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Asym.Unit (111 KB)
Biol.Unit 1, α-C (6.4 MB)
Biol.Unit 1 (6.4 MB)
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Title
:
HUMAN RHINOVIRUS 2 BOUND TO A CONCATAMER OF THE VLDL RECEPTOR MODULE V3
Authors
:
J. Querol-Audi, J. Pous, I. Fita, N. Verdaguer
Date
:
09 Jul 08 (Deposition) - 07 Apr 09 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (60x)
Keywords
:
Human Rhinovirus, Vldl-Receptor, Virus-Protein Complex, Icosahedral Virus, Atp-Binding, Capsid Protein, Covalent Protein-Rna Linkage, Cytoplasmic Vesicle, Helicase, Host-Virus Interaction, Hydrolase, Lipoprotein, Membrane, Myristate, Nucleotide-Binding, Nucleotidyltransferase, Phosphoprotein, Protease, Rna Replication, Rna-Binding, Rna-Directed Rna Polymerase, Thiol Protease, Transferase, Virion, Cholesterol Metabolism, Coated Pit, Egf-Like Domain, Endocytosis, Glycoprotein, Lipid Metabolism, Lipid Transport, Receptor, Steroid Metabolism, Transmembrane, Transport, Vldl, Virus
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Reference
:
J. Querol-Audi, T. Konecsni, J. Pous, O. Carugo, I. Fita, N. Verdaguer D. Blaas
Minor Group Human Rhinovirus-Receptor Interactions: Geometr Of Multimodular Attachment And Basis Of Recognition
Febs Lett. V. 583 235 2009
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Hetero Components
(1, 60)
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All Hetero Components
1a: CALCIUM ION (CAa)
2a: LAURIC ACID (DAOa)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
DAO
60
Ligand/Ion
LAURIC ACID
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:99 , ASN A:100 , LEU A:101 , GLN A:102 , ILE A:123 , TYR A:145 , ASN A:211
BINDING SITE FOR RESIDUE DAO A 290
2
AC2
SOFTWARE
TRP E:22 , ASP E:25 , GLU E:27 , ASP E:29 , ASP E:35 , GLU E:36
BINDING SITE FOR RESIDUE CA E 50
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PROSITE Patterns/Profiles
(1, 60)
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1: LDLRA_1 ()
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LDLRA_1
PS01209
LDL-receptor class A (LDLRA) domain signature.
VLDLR_HUMAN
45-67
84-108
127-149
166-188
205-229
251-273
290-312
331-355
60
-
-
E:17-39
-
-
-
-
-
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CATH Domains
(1, 3)
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1a: CATH_3dprC00 (C:1-237)
1b: CATH_3dprB00 (B:12-261)
1c: CATH_3dprA00 (A:15-283)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Hrv-2 (Human rhinovirus 2)
(1)
1a
3dprC00
C:1-237
1b
3dprB00
B:12-261
1c
3dprA00
A:15-283
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Asym.Unit (111 KB)
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Biol.Unit 1 (6.4 MB)
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