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3DOW
Asym. Unit
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Asym.Unit (27 KB)
Biol.Unit 1 (23 KB)
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(1)
Title
:
COMPLEX STRUCTURE OF GABA TYPE A RECEPTOR ASSOCIATED PROTEIN AND ITS BINDING EPITOPE ON CALRETICULIN
Authors
:
Y. Thielmann, O. H. Weiergraeber, D. Willbold
Date
:
07 Jul 08 (Deposition) - 24 Feb 09 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha-Beta, Beta-Grasp Fold, Cytoplasm, Cytoskeleton, Golgi Apparatus, Membrane, Microtubule, Protein Transport, Transport, Calcium, Chaperone, Endoplasmic Reticulum, Extracellular Matrix, Lectin, Metal-Binding, Secreted, Zinc
(Keyword Search:
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Reference
:
Y. Thielmann, O. H. Weiergraber, J. Mohrluder, D. Willbold
Structural Framework Of The Gabarap-Calreticulin Interface - Implications For Substrate Binding To Endoplasmic Reticulum Chaperones.
Febs J. V. 276 1140 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: AMINO GROUP (NH2a)
2a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NH2
1
Mod. Amino Acid
AMINO GROUP
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:71 , HIS A:101 , GLU A:103 , GLU A:114
BINDING SITE FOR RESIDUE ZN A 201
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(5, 5)
Info
All Exons
Exon 1.1 (A:3-32)
Exon 1.2 (A:33-59)
Exon 1.3 (A:59-98)
Exon 1.4 (A:99-119)
Exon 2.5 (B:5-12)
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
6: Boundary 2.4/2.5
7: Boundary 2.5/2.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000302386
1
ENSE00001310308
chr17:
7145772-7145560
213
GBRAP_HUMAN
1-30
30
1
A:3-32
30
1.2
ENST00000302386
2
ENSE00001279719
chr17:
7144998-7144920
79
GBRAP_HUMAN
31-57
27
1
A:33-59
27
1.3
ENST00000302386
3
ENSE00001279716
chr17:
7144779-7144661
119
GBRAP_HUMAN
57-96
40
1
A:59-98
40
1.4
ENST00000302386
4
ENSE00001293387
chr17:
7144238-7143333
906
GBRAP_HUMAN
97-117
21
1
A:99-119
21
2.1
ENST00000316448
1
ENSE00001255609
chr19:
13049414-13049584
171
CALR_HUMAN
1-31
31
0
-
-
2.2
ENST00000316448
2
ENSE00001255592
chr19:
13049948-13050049
102
CALR_HUMAN
31-65
35
0
-
-
2.3
ENST00000316448
3
ENSE00001255581
chr19:
13050242-13050445
204
CALR_HUMAN
65-133
69
0
-
-
2.4
ENST00000316448
4
ENSE00001255572
chr19:
13050867-13050961
95
CALR_HUMAN
133-164
32
0
-
-
2.5
ENST00000316448
5
ENSE00001255567
chr19:
13051057-13051266
210
CALR_HUMAN
165-234
70
1
B:5-12
8
2.6
ENST00000316448
6
ENSE00001255558
chr19:
13051355-13051468
114
CALR_HUMAN
235-272
38
0
-
-
2.7
ENST00000316448
7
ENSE00001255547
chr19:
13051558-13051701
144
CALR_HUMAN
273-320
48
0
-
-
2.8
ENST00000316448
8
ENSE00001255537
chr19:
13054351-13054443
93
CALR_HUMAN
321-351
31
0
-
-
2.9
ENST00000316448
9
ENSE00001255601
chr19:
13054527-13055304
778
CALR_HUMAN
352-417
66
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3dowa_ (A:)
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)
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)
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)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
GABARAP-like
(33)
Protein domain
:
GABA(A) receptor associated protein GABARAP
(7)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3dowa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3dowA00 (A:1-119)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Homo sapiens. Organism_taxid: 9606.
(3)
1a
3dowA00
A:1-119
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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