PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3DNM
Asym. Unit
Info
Asym.Unit (192 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (49 KB)
Biol.Unit 4 (49 KB)
Biol.Unit 5 (185 KB)
Biol.Unit 6 (184 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE HORMONE-SENSITIVE LIPASE FROM A METAGENOME LIBRARY
Authors
:
K. Y. Hwang, K. H. Nam
Date
:
02 Jul 08 (Deposition) - 13 Jan 09 (Release) - 10 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,D (2x)
Biol. Unit 6: B,C (2x)
Keywords
:
Alpha/Beta Hydrolase Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. H. Nam, M. -Y. Kim, S. -J. Kim, A. Priyadarshi, S. -T. Kwon, B. -S. Koo, S. -H. Yoon, K. Y. Hwang
Structural And Functional Analysis Of A Novel Hormone-Sensitive Lipase From A Metagenome Library
Proteins V. 74 1036 2008
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 18)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
1d: BETA-MERCAPTOETHANOL (BMEd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
4
Ligand/Ion
BETA-MERCAPTOETHANOL
2
SO4
14
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:90 , SER A:157 , LEU A:206 , HIS A:281
BINDING SITE FOR RESIDUE BME A 325
02
AC2
SOFTWARE
ALA A:55 , GLU A:56 , GLN A:105 , LYS A:108
BINDING SITE FOR RESIDUE SO4 A 323
03
AC3
SOFTWARE
ARG A:194 , TYR A:234 , ARG A:263 , TRP B:195
BINDING SITE FOR RESIDUE SO4 A 324
04
AC4
SOFTWARE
SER B:157 , LEU B:206 , HIS B:281 , HOH B:385
BINDING SITE FOR RESIDUE BME B 330
05
AC5
SOFTWARE
ALA B:55 , GLU B:56 , GLN B:105 , LYS B:108
BINDING SITE FOR RESIDUE SO4 B 323
06
AC6
SOFTWARE
THR A:258 , THR A:259 , GLU A:262 , THR B:258 , THR B:259 , GLU B:262
BINDING SITE FOR RESIDUE SO4 B 324
07
AC7
SOFTWARE
ARG B:194 , LYS B:226 , TYR B:234 , ARG B:263
BINDING SITE FOR RESIDUE SO4 B 325
08
AC8
SOFTWARE
ARG B:19 , LEU B:22 , GLN B:23
BINDING SITE FOR RESIDUE SO4 B 326
09
AC9
SOFTWARE
ASP B:39 , GLN B:40 , ASP C:118 , LEU C:121 , HOH C:371
BINDING SITE FOR RESIDUE SO4 B 327
10
BC1
SOFTWARE
ASP B:118 , TYR B:119 , ARG B:120
BINDING SITE FOR RESIDUE SO4 B 328
11
BC2
SOFTWARE
ASP B:64 , THR B:144 , HOH B:378 , HOH B:379
BINDING SITE FOR RESIDUE SO4 B 329
12
BC3
SOFTWARE
GLY C:90 , SER C:157 , ALA C:207 , MET C:215 , HIS C:281 , HOH C:359
BINDING SITE FOR RESIDUE BME C 325
13
BC4
SOFTWARE
GLU C:56 , GLN C:105 , LYS C:108
BINDING SITE FOR RESIDUE SO4 C 323
14
BC5
SOFTWARE
ARG C:194 , TYR C:234 , ARG C:263
BINDING SITE FOR RESIDUE SO4 C 324
15
BC6
SOFTWARE
SER D:157 , LEU D:206 , MET D:215 , HIS D:281
BINDING SITE FOR RESIDUE BME D 326
16
BC7
SOFTWARE
ALA D:55 , GLU D:56 , GLN D:105 , LYS D:108
BINDING SITE FOR RESIDUE SO4 D 323
17
BC8
SOFTWARE
ARG D:194 , TYR D:234 , ARG D:263
BINDING SITE FOR RESIDUE SO4 D 324
18
BC9
SOFTWARE
MET D:177
BINDING SITE FOR RESIDUE SO4 D 325
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (192 KB)
Header - Asym.Unit
Biol.Unit 1 (50 KB)
Header - Biol.Unit 1
Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
Biol.Unit 3 (49 KB)
Header - Biol.Unit 3
Biol.Unit 4 (49 KB)
Header - Biol.Unit 4
Biol.Unit 5 (185 KB)
Header - Biol.Unit 5
Biol.Unit 6 (184 KB)
Header - Biol.Unit 6
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3DNM
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
