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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3DNI
Asym. Unit
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Asym.Unit (58 KB)
Biol.Unit 1 (101 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC REFINEMENT AND STRUCTURE OF DNASE I AT 2 ANGSTROMS RESOLUTION
Authors
:
C. Oefner, D. Suck
Date
:
20 Aug 92 (Deposition) - 31 Jan 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Endonuclease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Oefner, D. Suck
Crystallographic Refinement And Structure Of Dnase I At 2 A Resolution.
J. Mol. Biol. V. 192 605 1986
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: ALPHA D-GALACTOSE (GLAa)
4a: ALPHA-D-MANNOSE (MANa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
GLA
1
Ligand/Ion
ALPHA D-GALACTOSE
4
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:18 , NAG A:262 , HOH A:417 , HOH A:476
BINDING SITE FOR RESIDUE NAG A 261
2
AC2
SOFTWARE
GLU A:244 , NAG A:261 , BMA A:263
BINDING SITE FOR RESIDUE NAG A 262
3
AC3
SOFTWARE
NAG A:262 , MAN A:264 , BMA A:265 , BMA A:266 , HOH A:581
BINDING SITE FOR RESIDUE BMA A 263
4
AC4
SOFTWARE
BMA A:263 , BMA A:265
BINDING SITE FOR RESIDUE MAN A 264
5
AC5
SOFTWARE
BMA A:263 , MAN A:264 , BMA A:266 , HOH A:612 , HOH A:618
BINDING SITE FOR RESIDUE BMA A 265
6
AC6
SOFTWARE
BMA A:263 , BMA A:265 , GLA A:267
BINDING SITE FOR RESIDUE BMA A 266
7
AC7
SOFTWARE
BMA A:266
BINDING SITE FOR RESIDUE GLA A 267
8
AC8
SOFTWARE
ASP A:201 , THR A:203 , THR A:205 , THR A:207 , HOH A:355 , HOH A:356
BINDING SITE FOR RESIDUE CA A 281
9
AC9
SOFTWARE
ASP A:99 , ASP A:107 , PHE A:109 , SER A:110 , GLU A:112 , HOH A:408 , HOH A:409
BINDING SITE FOR RESIDUE CA A 282
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_DNAS1_BOVIN_001 (H121P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DNAS1_BOVIN_001
*
H
143
P
DNAS1_BOVIN
---
---
A
H
121
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: DNASE_I_1 (A:130-150)
2: DNASE_I_2 (A:167-174)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNASE_I_1
PS00919
Deoxyribonuclease I signature 1.
DNAS1_BOVIN
152-172
1
A:130-150
2
DNASE_I_2
PS00918
Deoxyribonuclease I signature 2.
DNAS1_BOVIN
189-196
1
A:167-174
[
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Exons
(8, 8)
Info
All Exons
Exon 1.2 (A:1-27)
Exon 1.3 (A:28-57)
Exon 1.4 (A:57-85)
Exon 1.5 (A:85-124 (gaps))
Exon 1.6 (A:124-161)
Exon 1.7 (A:162-213)
Exon 1.8 (A:213-245)
Exon 1.9 (A:246-260)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000026784
1
ENSBTAE00000293181
chr25:
3564711-3564829
119
DNAS1_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000026784
2
ENSBTAE00000218065
chr25:
3565156-3565303
148
DNAS1_BOVIN
1-49
49
1
A:1-27
27
1.3
ENSBTAT00000026784
3
ENSBTAE00000420413
chr25:
3565639-3565727
89
DNAS1_BOVIN
50-79
30
1
A:28-57
30
1.4
ENSBTAT00000026784
4
ENSBTAE00000410212
chr25:
3565904-3565987
84
DNAS1_BOVIN
79-107
29
1
A:57-85
29
1.5
ENSBTAT00000026784
5
ENSBTAE00000218074
chr25:
3566232-3566347
116
DNAS1_BOVIN
107-146
40
1
A:85-124 (gaps)
40
1.6
ENSBTAT00000026784
6
ENSBTAE00000407443
chr25:
3566499-3566611
113
DNAS1_BOVIN
146-183
38
1
A:124-161
38
1.7
ENSBTAT00000026784
7
ENSBTAE00000398022
chr25:
3566701-3566855
155
DNAS1_BOVIN
184-235
52
1
A:162-213
52
1.8
ENSBTAT00000026784
8
ENSBTAE00000425804
chr25:
3567129-3567225
97
DNAS1_BOVIN
235-267
33
1
A:213-245
33
1.9
ENSBTAT00000026784
9
ENSBTAE00000293180
chr25:
3567369-3567733
365
DNAS1_BOVIN
268-282
15
1
A:246-260
15
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3dnia_ (A:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNase I-like
(70)
Superfamily
:
DNase I-like
(70)
Family
:
DNase I-like
(31)
Protein domain
:
Deoxyribonuclease I
(11)
Cow (Bos taurus) [TaxId: 9913]
(11)
1a
d3dnia_
A:
[
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]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3dniA00 (A:1-260)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Deoxyribonuclease I; Chain A
(35)
Homologous Superfamily
:
[code=3.60.10.10, no name defined]
(35)
Cow (Bos taurus)
(1)
1a
3dniA00
A:1-260
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Protein
Nucleic
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Sidechain
Hetero
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (58 KB)
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