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3DNE
Asym. Unit
Info
Asym.Unit (73 KB)
Biol.Unit 1 (68 KB)
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(1)
Title
:
CAMP-DEPENDENT PROTEIN KINASE PKA CATALYTIC SUBUNIT WITH PKI-5-24
Authors
:
A. Schiffer, K. U. Wendt
Date
:
02 Jul 08 (Deposition) - 23 Jun 09 (Release) - 09 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,I
Biol. Unit 1: A,I (1x)
Keywords
:
Atp-Binding, Kinase, Lipoprotein, Myristate, Nucleotide-Binding, Nucleus, Phosphoprotein, Serine/Threonine-Protein Kinase, Transferase, Camp, Protein Kinase Inhibitor, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Orts, J. Tuma, M. Reese, S. K. Grimm, P. Monecke, S. Bartoschek, A. Schiffer, K. U. Wendt, C. Griesinger, T. Carlomagno
Crystallography-Independent Determination Of Ligand Binding Modes
Angew. Chem. Int. Ed. Engl. V. 47 7736 2008
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 3-PYRIDIN-4-YL-1H-INDAZOLE (LL1a)
2a: PHOSPHOSERINE (SEPa)
3a: PHOSPHOTHREONINE (TPOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LL1
1
Ligand/Ion
3-PYRIDIN-4-YL-1H-INDAZOLE
2
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
3
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:49 , ALA A:70 , GLU A:121 , TYR A:122 , VAL A:123 , LEU A:173 , THR A:183 , ASP A:184 , PHE A:327
BINDING SITE FOR RESIDUE LL1 A 351
2
AC2
SOFTWARE
LYS A:83 , GLN A:84 , GLU A:86 , LEU A:89 , ARG A:93 , GLU A:127 , PHE A:129 , SER A:130 , ARG A:133 , LYS A:168 , PRO A:169 , GLU A:170 , PHE A:187 , LYS A:189 , ARG A:190 , VAL A:191 , LYS A:192 , LEU A:198 , CYS A:199 , GLY A:200 , THR A:201 , PRO A:202 , GLU A:203 , GLU A:230 , GLY A:234 , TYR A:235 , PRO A:236 , PHE A:239 , ALA A:240 , ASP A:241 , ILE A:246 , ASP A:328 , GLU A:349 , HOH A:355 , HOH A:370 , HOH A:478 , HOH I:25 , HOH I:26 , HOH I:27 , HOH I:28 , HOH I:29 , HOH I:30 , HOH I:31 , HOH I:32 , HOH I:33 , HOH I:34 , HOH I:35 , HOH I:36 , HOH I:37 , HOH I:38 , HOH I:39 , HOH I:41 , HOH I:42 , HOH I:44 , HOH I:45 , HOH I:47 , HOH I:48 , HOH I:52 , HOH I:54
BINDING SITE FOR CHAIN I OF CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:49-72)
2: PROTEIN_KINASE_ST (A:162-174)
3: AGC_KINASE_CTER (A:298-350)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
KAPCA_BOVIN
50-73
1
A:49-72
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
KAPCA_BOVIN
163-175
1
A:162-174
3
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
KAPCA_BOVIN
299-351
1
A:298-350
[
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Exons
(10, 10)
Info
All Exons
Exon 1.1 (A:13-15)
Exon 1.2 (A:15-35)
Exon 1.3 (A:36-78)
Exon 1.4 (A:79-111)
Exon 1.5 (A:112-139)
Exon 1.6 (A:139-181)
Exon 1.7 (A:182-213)
Exon 1.8 (A:214-254)
Exon 1.9 (A:255-309)
Exon 1.10 (A:310-350)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000008727
1
ENSBTAE00000070584
chr7:
9765104-9765150
47
KAPCA_BOVIN
1-16
16
1
A:13-15
3
1.2
ENSBTAT00000008727
2
ENSBTAE00000389552
chr7:
9773081-9773142
62
KAPCA_BOVIN
16-36
21
1
A:15-35
21
1.3
ENSBTAT00000008727
3
ENSBTAE00000070589
chr7:
9773591-9773719
129
KAPCA_BOVIN
37-79
43
1
A:36-78
43
1.4
ENSBTAT00000008727
4
ENSBTAE00000070592
chr7:
9775980-9776078
99
KAPCA_BOVIN
80-112
33
1
A:79-111
33
1.5
ENSBTAT00000008727
5
ENSBTAE00000425416
chr7:
9777080-9777162
83
KAPCA_BOVIN
113-140
28
1
A:112-139
28
1.6
ENSBTAT00000008727
6
ENSBTAE00000070601
chr7:
9778181-9778307
127
KAPCA_BOVIN
140-182
43
1
A:139-181
43
1.7
ENSBTAT00000008727
7
ENSBTAE00000070605
chr7:
9778400-9778495
96
KAPCA_BOVIN
183-214
32
1
A:182-213
32
1.8
ENSBTAT00000008727
8
ENSBTAE00000070609
chr7:
9778596-9778718
123
KAPCA_BOVIN
215-255
41
1
A:214-254
41
1.9
ENSBTAT00000008727
9
ENSBTAE00000427228
chr7:
9780756-9780920
165
KAPCA_BOVIN
256-310
55
1
A:255-309
55
1.10
ENSBTAT00000008727
10
ENSBTAE00000383679
chr7:
9781489-9781832
344
KAPCA_BOVIN
311-351
41
1
A:310-350
41
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3dnea_ (A:)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
cAMP-dependent PK, catalytic subunit
(75)
Cow (Bos taurus) [TaxId: 9913]
(39)
1a
d3dnea_
A:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3dneA02 (A:33-126,A:318-348)
2a: CATH_3dneA01 (A:13-32,A:127-317)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Bovine,cow,domestic cattle,domestic cow (Bos taurus)
(2)
1a
3dneA02
A:33-126,A:318-348
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Bovine,cow,domestic cattle,domestic cow (Bos taurus)
(2)
2a
3dneA01
A:13-32,A:127-317
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Chain I
Asymmetric Unit 1
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