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Asym. Unit
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Asym.Unit (23 KB)
Biol.Unit 1 (18 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN TYPE III COLLAGEN G982-G1023 CONTAINING C-TERMINAL CYSTINE KNOT
Authors
:
S. P. Boudko, J. Engel, K. Okuyama, K. Mizuno, H. P. Bachinger, M. A. Schumacher
Date
:
01 Jul 08 (Deposition) - 30 Sep 08 (Release) - 05 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Collagen Iii, Cystine Knot, Triple Helix, Glycine, Mad Phasing, Alternative Splicing, Disease Mutation, Ehlers- Danlos Syndrome, Extracellular Matrix, Glycoprotein, Hydroxylation, Phosphoprotein, Polymorphism, Secreted, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. P. Boudko, J. Engel, K. Okuyama, K. Mizuno, H. P. Bachinger, M. A. Schumacher
Crystal Structure Of Human Type Iii Collagen Gly991-Gly1032 Cystine Knot-Containing Peptide Shows Both 7/2 And 10/3 Triple Helical Symmetries.
J. Biol. Chem. V. 283 32580 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: 4-HYDROXYPROLINE (HYPa)
1b: 4-HYDROXYPROLINE (HYPb)
1c: 4-HYDROXYPROLINE (HYPc)
1d: 4-HYDROXYPROLINE (HYPd)
1e: 4-HYDROXYPROLINE (HYPe)
1f: 4-HYDROXYPROLINE (HYPf)
1g: 4-HYDROXYPROLINE (HYPg)
1h: 4-HYDROXYPROLINE (HYPh)
1i: 4-HYDROXYPROLINE (HYPi)
1j: 4-HYDROXYPROLINE (HYPj)
1k: 4-HYDROXYPROLINE (HYPk)
1l: 4-HYDROXYPROLINE (HYPl)
1m: 4-HYDROXYPROLINE (HYPm)
1n: 4-HYDROXYPROLINE (HYPn)
1o: 4-HYDROXYPROLINE (HYPo)
1p: 4-HYDROXYPROLINE (HYPp)
1q: 4-HYDROXYPROLINE (HYPq)
1r: 4-HYDROXYPROLINE (HYPr)
1s: 4-HYDROXYPROLINE (HYPs)
1t: 4-HYDROXYPROLINE (HYPt)
1u: 4-HYDROXYPROLINE (HYPu)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HYP
21
Mod. Amino Acid
4-HYDROXYPROLINE
2
MSE
3
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(16, 48)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_011154 (G4V, chain A/B/C, )
02: VAR_011155 (G7E, chain A/B/C, )
03: VAR_011156 (G7R, chain A/B/C, )
04: VAR_001798 (G7S, chain A/B/C, )
05: VAR_001799 (G10V, chain A/B/C, )
06: VAR_001800 (G13D, chain A/B/C, )
07: VAR_011157 (G13V, chain A/B/C, )
08: VAR_001801 (G16E, chain A/B/C, )
09: VAR_011158 (G16R, chain A/B/C, )
10: VAR_001802 (G19V, chain A/B/C, )
11: VAR_011159 (G22R, chain A/B/C, )
12: VAR_001803 (G25E, chain A/B/C, )
13: VAR_001804 (G28D, chain A/B/C, )
14: VAR_001805 (G28V, chain A/B/C, )
15: VAR_001806 (G31E, chain A/B/C, )
16: VAR_001807 (G31R, chain A/B/C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_011154
G
1161
V
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
4
V
02
UniProt
VAR_011155
G
1164
E
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
7
E
03
UniProt
VAR_011156
G
1164
R
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
7
R
04
UniProt
VAR_001798
G
1164
S
CO3A1_HUMAN
Unclassified
---
A/B/C
G
7
S
05
UniProt
VAR_001799
G
1167
V
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
10
V
06
UniProt
VAR_001800
G
1170
D
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
13
D
07
UniProt
VAR_011157
G
1170
V
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
13
V
08
UniProt
VAR_001801
G
1173
E
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
16
E
09
UniProt
VAR_011158
G
1173
R
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
16
R
10
UniProt
VAR_001802
G
1176
V
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
19
V
11
UniProt
VAR_011159
G
1179
R
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
22
R
12
UniProt
VAR_001803
G
1182
E
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
25
E
13
UniProt
VAR_001804
G
1185
D
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
28
D
14
UniProt
VAR_001805
G
1185
V
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
28
V
15
UniProt
VAR_001806
G
1188
E
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
31
E
16
UniProt
VAR_001807
G
1188
R
CO3A1_HUMAN
Disease (EDS4)
---
A/B/C
G
31
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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