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3DM5
Biol. Unit 5
Info
Asym.Unit (143 KB)
Biol.Unit 1 (270 KB)
Biol.Unit 2 (137 KB)
Biol.Unit 3 (137 KB)
Biol.Unit 4 (70 KB)
Biol.Unit 5 (70 KB)
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(1)
Title
:
STRUCTURES OF SRP54 AND SRP19, THE TWO PROTEINS ASSEMBLING THE RIBONUCLEIC CORE OF THE SIGNAL RECOGNITION PARTICLE FROM THE ARCHAEON PYROCOCCUS FURIOSUS.
Authors
:
P. F. Egea, J. Napetschnig, P. Walter, R. M. Stroud
Date
:
30 Jun 08 (Deposition) - 04 Nov 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.51
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A (2x)
Biol. Unit 3: B (2x)
Biol. Unit 4: A (1x)
Biol. Unit 5: B (1x)
Keywords
:
Protein-Rna, Signal Recognition Particle, Srp-Gtpase, Protein Targeting, Cytoplasm, Gtp-Binding, Nucleotide- Binding, Ribonucleoprotein, Rna-Binding, Rna Binding Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. F. Egea, J. Napetschnig, P. Walter, R. M. Stroud
Structures Of Srp54 And Srp19, The Two Proteins That Organize The Ribonucleic Core Of The Signal Recognition Particle From Pyrococcus Furiosus.
Plos One V. 3 E3528 2008
(for further references see the
PDB file header
)
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC8 (SOFTWARE)
6: AC9 (SOFTWARE)
7: BC1 (SOFTWARE)
8: BC2 (SOFTWARE)
9: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
LYS B:126 , ARG B:127 , ASP B:380
BINDING SITE FOR RESIDUE SO4 B 444
2
AC4
SOFTWARE
ARG A:148 , HIS B:145
BINDING SITE FOR RESIDUE SO4 B 445
3
AC5
SOFTWARE
HIS A:145 , ARG B:148
BINDING SITE FOR RESIDUE SO4 A 446
4
AC6
SOFTWARE
ARG A:33 , GLN B:227 , ASN B:230
BINDING SITE FOR RESIDUE SO4 A 447
5
AC8
SOFTWARE
LYS B:72 , LYS B:311
BINDING SITE FOR RESIDUE SO4 B 446
6
AC9
SOFTWARE
GLN A:227 , ASN A:230 , ARG B:33
BINDING SITE FOR RESIDUE SO4 B 447
7
BC1
SOFTWARE
SER B:70 , LYS B:71
BINDING SITE FOR RESIDUE SO4 B 448
8
BC2
SOFTWARE
GLY A:110 , SER A:111 , GLY A:112 , LYS A:113 , THR A:114 , THR A:115 , LYS A:119 , ARG A:140 , GLN A:146 , LYS A:248 , ASP A:250 , GLY A:273 , THR A:274 , GLY A:275 , GLU A:276 , GLU B:276
BINDING SITE FOR RESIDUE GDP A 501
9
BC3
SOFTWARE
GLU A:276 , GLY B:110 , SER B:111 , GLY B:112 , LYS B:113 , THR B:114 , THR B:115 , LYS B:119 , ARG B:140 , GLN B:146 , LYS B:248 , ASP B:250 , GLY B:273 , THR B:274 , GLY B:275 , GLU B:276
BINDING SITE FOR RESIDUE GDP B 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SRP54 (B:268-281)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SRP54
PS00300
SRP54-type proteins GTP-binding domain signature.
SRP54_PYRFU
268-281
1
-
B:268-281
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (143 KB)
Header - Asym.Unit
Biol.Unit 1 (270 KB)
Header - Biol.Unit 1
Biol.Unit 2 (137 KB)
Header - Biol.Unit 2
Biol.Unit 3 (137 KB)
Header - Biol.Unit 3
Biol.Unit 4 (70 KB)
Header - Biol.Unit 4
Biol.Unit 5 (70 KB)
Header - Biol.Unit 5
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